RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 V9GYY9 64 aa3.71□□□□□ -1.82
HERC1-209ENST00000560519 CAMK2N1Q7Z7J9 78 aa3.69□□□□□ -1.82
HERC1-209ENST00000560519 UQCR11O14957 56 aa3.66□□□□□ -1.82
HERC1-209ENST00000560519 Q1T7F1 81 aa3.66□□□□□ -1.82
HERC1-209ENST00000560519 SPINT4Q6UDR6 99 aa3.66□□□□□ -1.82
HERC1-209ENST00000560519 RPS28P62857 69 aaKnown RBP3.65□□□□□ -1.83
HERC1-209ENST00000560519 KRTAP15-1Q3LI76 137 aa3.65□□□□□ -1.83
HERC1-209ENST00000560519 KRTAP19-3Q7Z4W3 81 aa3.64□□□□□ -1.83
HERC1-209ENST00000560519 KRTAP12-1P59990 96 aa3.63□□□□□ -1.83
HERC1-209ENST00000560519 A8MU10 97 aa3.62□□□□□ -1.83
HERC1-209ENST00000560519 PSPHP1O15172 72 aa3.6□□□□□ -1.83
HERC1-209ENST00000560519 KRTAP19-7Q3SYF9 63 aa3.6□□□□□ -1.83
HERC1-209ENST00000560519 SVIPQ8NHG7 77 aa3.6□□□□□ -1.83
HERC1-209ENST00000560519 MT1EP04732 61 aa3.59□□□□□ -1.83
HERC1-209ENST00000560519 MIR22HGQ0VDD5 57 aa3.58□□□□□ -1.84
HERC1-209ENST00000560519 PP632Q6XCG6 107 aa3.57□□□□□ -1.84
HERC1-209ENST00000560519 K7ERS5 55 aa3.53□□□□□ -1.84
HERC1-209ENST00000560519 MT1GP13640 62 aa3.53□□□□□ -1.84
HERC1-209ENST00000560519 A6NED7 52 aa3.52□□□□□ -1.85
HERC1-209ENST00000560519 MT4P47944 62 aa3.52□□□□□ -1.85
HERC1-209ENST00000560519 HMCN1Q96RW7 5635 aa3.48□□□□□ -1.85
HERC1-209ENST00000560519 KRTAP5-10Q6L8G5 202 aa3.46□□□□□ -1.86
HERC1-209ENST00000560519 TNP1P09430 55 aa3.45□□□□□ -1.86
HERC1-209ENST00000560519 KRTAP19-5Q3LI72 72 aa3.44□□□□□ -1.86
HERC1-209ENST00000560519 MT1MQ8N339 61 aa3.44□□□□□ -1.86
HERC1-209ENST00000560519 C10orf95Q9H7T3 257 aa3.44□□□□□ -1.86
HERC1-209ENST00000560519 KRTAP5-4Q6L8H1 288 aa3.42□□□□□ -1.86
HERC1-209ENST00000560519 CDC42SE1Q9NRR8 79 aa3.4□□□□□ -1.87
HERC1-209ENST00000560519 AHNAK2Q8IVF2 5795 aa3.39□□□□□ -1.87
HERC1-209ENST00000560519 MT1LQ93083 61 aa3.39□□□□□ -1.87
HERC1-209ENST00000560519 KRTAP5-7Q6L8G8 165 aa3.37□□□□□ -1.87
HERC1-209ENST00000560519 KRTAP25-1Q3LHN0 102 aa3.36□□□□□ -1.87
HERC1-209ENST00000560519 LCE3AQ5TA76 89 aa3.31□□□□□ -1.88
HERC1-209ENST00000560519 KRTAP4-3Q9BYR4 195 aa3.3□□□□□ -1.88
HERC1-209ENST00000560519 ROMO1P60602 79 aa3.28□□□□□ -1.88
HERC1-209ENST00000560519 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
HERC1-209ENST00000560519 KRTAP20-2Q3LI61 65 aa3.25□□□□□ -1.89
HERC1-209ENST00000560519 SPRR5A0A1B0GTR4 108 aa3.24□□□□□ -1.89
HERC1-209ENST00000560519 BRK1Q8WUW1 75 aa3.24□□□□□ -1.89
HERC1-209ENST00000560519 A0A0A0MQY5 61 aa3.22□□□□□ -1.89
HERC1-209ENST00000560519 KRTAP12-3P60328 96 aa3.21□□□□□ -1.9
HERC1-209ENST00000560519 KRTAP12-4P60329 112 aa3.2□□□□□ -1.9
HERC1-209ENST00000560519 KRTAP5-5Q701N2 237 aaPredicted RBP3.18□□□□□ -1.9
HERC1-209ENST00000560519 PMAIP1Q13794 54 aa3.07□□□□□ -1.92
HERC1-209ENST00000560519 MT3P25713 68 aa3.06□□□□□ -1.92
HERC1-209ENST00000560519 SYNE1Q8NF91 8797 aaKnown RBP3.01□□□□□ -1.93
HERC1-209ENST00000560519 PRO0628Q9UI54 55 aa3.01□□□□□ -1.93
HERC1-209ENST00000560519 LCE3CQ5T5A8 94 aa2.97□□□□□ -1.93
HERC1-209ENST00000560519 KRTAP5-2Q701N4 177 aa2.96□□□□□ -1.94
HERC1-209ENST00000560519 KRTAP5-11Q6L8G4 156 aa2.93□□□□□ -1.94
HERC1-209ENST00000560519 KRTAP5-8O75690 187 aa2.91□□□□□ -1.94
HERC1-209ENST00000560519 MT1AP04731 61 aa2.9□□□□□ -1.95
HERC1-209ENST00000560519 MUC5ACP98088 5654 aa2.89□□□□□ -1.95
HERC1-209ENST00000560519 KRTAP6-1Q3LI64 71 aa2.86□□□□□ -1.95
HERC1-209ENST00000560519 PRAC1Q96KF2 57 aa2.86□□□□□ -1.95
HERC1-209ENST00000560519 OBSCNQ5VST9 7968 aa2.84□□□□□ -1.95
HERC1-209ENST00000560519 KTN1-AS1Q86SY8 53 aa2.83□□□□□ -1.96
HERC1-209ENST00000560519 AHNAKQ09666 5890 aaKnown RBP2.81□□□□□ -1.96
HERC1-209ENST00000560519 NDUFAF8A1L188 74 aa2.8□□□□□ -1.96
HERC1-209ENST00000560519 KRTAP6-2Q3LI66 62 aa2.79□□□□□ -1.96
HERC1-209ENST00000560519 MUC5BQ9HC84 5762 aaPredicted RBP2.79□□□□□ -1.96
HERC1-209ENST00000560519 KRTAP9-6A8MVA2 160 aa2.75□□□□□ -1.97
HERC1-209ENST00000560519 KRTAP5-1Q6L8H4 278 aa2.75□□□□□ -1.97
HERC1-209ENST00000560519 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
HERC1-209ENST00000560519 LCE1EQ5T753 118 aa2.61□□□□□ -1.99
HERC1-209ENST00000560519 LUZP6Q538Z0 58 aa2.47□□□□□ -2.01
HERC1-209ENST00000560519 LCE1FQ5T754 118 aa2.44□□□□□ -2.02
HERC1-209ENST00000560519 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
HERC1-209ENST00000560519 LCE1CQ5T751 118 aa2.34□□□□□ -2.03
HERC1-209ENST00000560519 LCE3DQ9BYE3 92 aa2.2□□□□□ -2.06
HERC1-209ENST00000560519 LCE3EQ5T5B0 92 aa2.1□□□□□ -2.07
HERC1-209ENST00000560519 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
HERC1-209ENST00000560519 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
HERC1-209ENST00000560519 INE1O15225 51 aa1.78□□□□□ -2.12
HERC1-209ENST00000560519 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
HERC1-209ENST00000560519 PRM1P04553 51 aa1.67□□□□□ -2.14
HERC1-209ENST00000560519 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
HERC1-209ENST00000560519 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 7 ms