RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 H3BS24 57 aa6.32□□□□□ -1.4
TSPAN3-208ENST00000560514 SPRR5A0A1B0GTR4 108 aa6.31□□□□□ -1.4
TSPAN3-208ENST00000560514 SPATA8Q6RVD6 105 aa6.3□□□□□ -1.4
TSPAN3-208ENST00000560514 COX7CP15954 63 aa6.29□□□□□ -1.4
TSPAN3-208ENST00000560514 SPINT4Q6UDR6 99 aa6.29□□□□□ -1.4
TSPAN3-208ENST00000560514 KRTAP12-1P59990 96 aa6.25□□□□□ -1.41
TSPAN3-208ENST00000560514 MT1LQ93083 61 aa6.25□□□□□ -1.41
TSPAN3-208ENST00000560514 KRTAP4-3Q9BYR4 195 aa6.23□□□□□ -1.41
TSPAN3-208ENST00000560514 H7BZZ5 65 aa6.22□□□□□ -1.41
TSPAN3-208ENST00000560514 SMIM26A0A096LP01 95 aa6.19□□□□□ -1.42
TSPAN3-208ENST00000560514 A0A1B0GU69 56 aa6.14□□□□□ -1.43
TSPAN3-208ENST00000560514 KRTAP20-2Q3LI61 65 aa6.11□□□□□ -1.43
TSPAN3-208ENST00000560514 TNP1P09430 55 aa6.05□□□□□ -1.44
TSPAN3-208ENST00000560514 A8MU10 97 aa6.02□□□□□ -1.45
TSPAN3-208ENST00000560514 C10orf95Q9H7T3 257 aa6.01□□□□□ -1.45
TSPAN3-208ENST00000560514 LCE3AQ5TA76 89 aa5.98□□□□□ -1.45
TSPAN3-208ENST00000560514 KRTAP12-4P60329 112 aa5.97□□□□□ -1.45
TSPAN3-208ENST00000560514 PRR15LQ9BU68 103 aa5.95□□□□□ -1.46
TSPAN3-208ENST00000560514 ANAPC13Q9BS18 74 aa5.94□□□□□ -1.46
TSPAN3-208ENST00000560514 ATP5EP56381 51 aaPredicted RBP5.88□□□□□ -1.47
TSPAN3-208ENST00000560514 KRTAP5-5Q701N2 237 aaPredicted RBP5.86□□□□□ -1.47
TSPAN3-208ENST00000560514 LINC01558Q9Y6Z2 57 aa5.85□□□□□ -1.47
TSPAN3-208ENST00000560514 CCDC179H3BU77 68 aa5.8□□□□□ -1.48
TSPAN3-208ENST00000560514 KRTAP12-3P60328 96 aa5.8□□□□□ -1.48
TSPAN3-208ENST00000560514 SYNE1Q8NF91 8797 aaKnown RBP5.79□□□□□ -1.48
TSPAN3-208ENST00000560514 UQCR11O14957 56 aa5.75□□□□□ -1.49
TSPAN3-208ENST00000560514 KRTAP25-1Q3LHN0 102 aa5.65□□□□□ -1.5
TSPAN3-208ENST00000560514 TMEM258P61165 79 aa5.63□□□□□ -1.51
TSPAN3-208ENST00000560514 AHNAKQ09666 5890 aaKnown RBP5.61□□□□□ -1.51
TSPAN3-208ENST00000560514 MUC5ACP98088 5654 aa5.59□□□□□ -1.51
TSPAN3-208ENST00000560514 MIR22HGQ0VDD5 57 aa5.57□□□□□ -1.52
TSPAN3-208ENST00000560514 KRTAP5-8O75690 187 aa5.55□□□□□ -1.52
TSPAN3-208ENST00000560514 K7ERS5 55 aa5.54□□□□□ -1.52
TSPAN3-208ENST00000560514 MUC5BQ9HC84 5762 aaPredicted RBP5.54□□□□□ -1.52
TSPAN3-208ENST00000560514 KRTAP23-1A1A580 65 aa5.51□□□□□ -1.53
TSPAN3-208ENST00000560514 KRTAP5-2Q701N4 177 aa5.49□□□□□ -1.53
TSPAN3-208ENST00000560514 V9GYY9 64 aa5.44□□□□□ -1.54
TSPAN3-208ENST00000560514 OBSCNQ5VST9 7968 aa5.41□□□□□ -1.54
TSPAN3-208ENST00000560514 KRTAP15-1Q3LI76 137 aa5.39□□□□□ -1.55
TSPAN3-208ENST00000560514 Q1T7F1 81 aa5.36□□□□□ -1.55
TSPAN3-208ENST00000560514 LCE3CQ5T5A8 94 aa5.34□□□□□ -1.55
TSPAN3-208ENST00000560514 PSPHP1O15172 72 aa5.32□□□□□ -1.56
TSPAN3-208ENST00000560514 MT1AP04731 61 aa5.32□□□□□ -1.56
TSPAN3-208ENST00000560514 KRTAP6-1Q3LI64 71 aa5.31□□□□□ -1.56
TSPAN3-208ENST00000560514 KRTAP6-2Q3LI66 62 aa5.21□□□□□ -1.58
TSPAN3-208ENST00000560514 CDC42SE1Q9NRR8 79 aa5.19□□□□□ -1.58
TSPAN3-208ENST00000560514 A6NED7 52 aa5.16□□□□□ -1.58
TSPAN3-208ENST00000560514 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.15□□□□□ -1.59
TSPAN3-208ENST00000560514 RPS28P62857 69 aaKnown RBP5.11□□□□□ -1.59
TSPAN3-208ENST00000560514 ROMO1P60602 79 aa5.1□□□□□ -1.59
TSPAN3-208ENST00000560514 KRTAP5-1Q6L8H4 278 aa5.04□□□□□ -1.6
TSPAN3-208ENST00000560514 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
TSPAN3-208ENST00000560514 KRTAP5-11Q6L8G4 156 aa4.95□□□□□ -1.62
TSPAN3-208ENST00000560514 MT3P25713 68 aa4.93□□□□□ -1.62
TSPAN3-208ENST00000560514 LCE1EQ5T753 118 aa4.64□□□□□ -1.67
TSPAN3-208ENST00000560514 PCP4P48539 62 aa4.58□□□□□ -1.68
TSPAN3-208ENST00000560514 LCE1BQ5T7P3 118 aa4.47□□□□□ -1.69
TSPAN3-208ENST00000560514 LCE1CQ5T751 118 aa4.3□□□□□ -1.72
TSPAN3-208ENST00000560514 KRTAP4-4Q9BYR3 166 aa4.29□□□□□ -1.72
TSPAN3-208ENST00000560514 BRK1Q8WUW1 75 aa4.2□□□□□ -1.74
TSPAN3-208ENST00000560514 LCE1FQ5T754 118 aa4□□□□□ -1.77
TSPAN3-208ENST00000560514 PMAIP1Q13794 54 aa3.99□□□□□ -1.77
TSPAN3-208ENST00000560514 PHGR1C9JFL3 82 aa3.94□□□□□ -1.78
TSPAN3-208ENST00000560514 LCE3DQ9BYE3 92 aa3.83□□□□□ -1.8
TSPAN3-208ENST00000560514 PRAC1Q96KF2 57 aa3.8□□□□□ -1.8
TSPAN3-208ENST00000560514 LCE3EQ5T5B0 92 aa3.58□□□□□ -1.84
TSPAN3-208ENST00000560514 PRO0628Q9UI54 55 aa3.5□□□□□ -1.85
TSPAN3-208ENST00000560514 KRTAP21-2Q3LI59 83 aa3.48□□□□□ -1.85
TSPAN3-208ENST00000560514 KTN1-AS1Q86SY8 53 aa3.39□□□□□ -1.87
TSPAN3-208ENST00000560514 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
TSPAN3-208ENST00000560514 LUZP6Q538Z0 58 aa3.36□□□□□ -1.87
TSPAN3-208ENST00000560514 SVIPQ8NHG7 77 aa3.22□□□□□ -1.89
TSPAN3-208ENST00000560514 KRTAP21-1Q3LI58 79 aa3□□□□□ -1.93
TSPAN3-208ENST00000560514 A0A0A0MQY5 61 aa2.58□□□□□ -2
TSPAN3-208ENST00000560514 PRM1P04553 51 aa2.55□□□□□ -2
TSPAN3-208ENST00000560514 NDUFAF8A1L188 74 aa2.4□□□□□ -2.03
TSPAN3-208ENST00000560514 MUC16Q8WXI7 14507 aa2.37□□□□□ -2.03
TSPAN3-208ENST00000560514 INE1O15225 51 aa1.96□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 99.7 ms