RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 KRTAP4-8A0A0G2JLE6 195 aa4.71□□□□□ -1.66
LDLR-212ENST00000560467 KRTAP4-8Q9BYQ9 185 aa4.71□□□□□ -1.66
LDLR-212ENST00000560467 GPR98Q8WXG9 6306 aa4.7□□□□□ -1.66
LDLR-212ENST00000560467 LCE3BQ5TA77 95 aa4.67□□□□□ -1.66
LDLR-212ENST00000560467 KRTAP10-12P60413 245 aa4.62□□□□□ -1.67
LDLR-212ENST00000560467 PP632Q6XCG6 107 aa4.62□□□□□ -1.67
LDLR-212ENST00000560467 KRTAP23-1A1A580 65 aa4.6□□□□□ -1.67
LDLR-212ENST00000560467 KRTAP10-7P60409 375 aaPredicted RBP4.6□□□□□ -1.67
LDLR-212ENST00000560467 LCE3AQ5TA76 89 aa4.49□□□□□ -1.69
LDLR-212ENST00000560467 DSTQ03001 7570 aaKnown RBP4.47□□□□□ -1.69
LDLR-212ENST00000560467 KRTAP4-9Q9BYQ8 210 aa4.45□□□□□ -1.7
LDLR-212ENST00000560467 KRTAP12-3P60328 96 aa4.38□□□□□ -1.71
LDLR-212ENST00000560467 KRTAP19-5Q3LI72 72 aa4.35□□□□□ -1.71
LDLR-212ENST00000560467 LCE5AQ5TCM9 118 aa4.34□□□□□ -1.71
LDLR-212ENST00000560467 KRTAP15-1Q3LI76 137 aa4.33□□□□□ -1.72
LDLR-212ENST00000560467 KRTAP19-7Q3SYF9 63 aa4.3□□□□□ -1.72
LDLR-212ENST00000560467 LCE1DQ5T752 114 aa4.3□□□□□ -1.72
LDLR-212ENST00000560467 MT1EP04732 61 aa4.29□□□□□ -1.72
LDLR-212ENST00000560467 KRTAP19-3Q7Z4W3 81 aa4.29□□□□□ -1.72
LDLR-212ENST00000560467 HMCN1Q96RW7 5635 aa4.26□□□□□ -1.73
LDLR-212ENST00000560467 KRTAP19-4Q3LI73 84 aa4.24□□□□□ -1.73
LDLR-212ENST00000560467 AHNAK2Q8IVF2 5795 aa4.24□□□□□ -1.73
LDLR-212ENST00000560467 MT4P47944 62 aa4.22□□□□□ -1.73
LDLR-212ENST00000560467 LCE4AQ5TA78 99 aa4.18□□□□□ -1.74
LDLR-212ENST00000560467 H3BS24 57 aa4.17□□□□□ -1.74
LDLR-212ENST00000560467 MT1GP13640 62 aa4.14□□□□□ -1.75
LDLR-212ENST00000560467 LUZP6Q538Z0 58 aa4.14□□□□□ -1.75
LDLR-212ENST00000560467 KRTAP5-10Q6L8G5 202 aa4.14□□□□□ -1.75
LDLR-212ENST00000560467 MT1LQ93083 61 aa4.14□□□□□ -1.75
LDLR-212ENST00000560467 NDUFAF8A1L188 74 aa4.11□□□□□ -1.75
LDLR-212ENST00000560467 MT1MQ8N339 61 aa4.1□□□□□ -1.75
LDLR-212ENST00000560467 LCE3CQ5T5A8 94 aa4.07□□□□□ -1.76
LDLR-212ENST00000560467 KRTAP4-6Q9BYQ5 205 aa4.07□□□□□ -1.76
LDLR-212ENST00000560467 KRTAP5-4Q6L8H1 288 aa4.06□□□□□ -1.76
LDLR-212ENST00000560467 KRTAP4-3Q9BYR4 195 aa4.05□□□□□ -1.76
LDLR-212ENST00000560467 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
LDLR-212ENST00000560467 KRTAP5-7Q6L8G8 165 aa4.01□□□□□ -1.77
LDLR-212ENST00000560467 KRTAP5-3Q6L8H2 238 aa3.97□□□□□ -1.77
LDLR-212ENST00000560467 KRTAP4-7Q9BYR0 210 aa3.92□□□□□ -1.78
LDLR-212ENST00000560467 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
LDLR-212ENST00000560467 KRTAP20-2Q3LI61 65 aa3.87□□□□□ -1.79
LDLR-212ENST00000560467 KRTAP5-5Q701N2 237 aaPredicted RBP3.78□□□□□ -1.8
LDLR-212ENST00000560467 KRTAP12-4P60329 112 aa3.73□□□□□ -1.81
LDLR-212ENST00000560467 LOC100996750A0A140TA64 210 aa3.7□□□□□ -1.82
LDLR-212ENST00000560467 KRTAP9-6A8MVA2 160 aa3.7□□□□□ -1.82
LDLR-212ENST00000560467 SYNE1Q8NF91 8797 aaKnown RBP3.67□□□□□ -1.82
LDLR-212ENST00000560467 AHNAKQ09666 5890 aaKnown RBP3.6□□□□□ -1.83
LDLR-212ENST00000560467 KRTAP4-11Q9BYQ6 195 aa3.6□□□□□ -1.83
LDLR-212ENST00000560467 INE1O15225 51 aa3.59□□□□□ -1.83
LDLR-212ENST00000560467 MT1AP04731 61 aa3.55□□□□□ -1.84
LDLR-212ENST00000560467 MUC5ACP98088 5654 aa3.54□□□□□ -1.84
LDLR-212ENST00000560467 MUC5BQ9HC84 5762 aaPredicted RBP3.54□□□□□ -1.84
LDLR-212ENST00000560467 KRTAP5-2Q701N4 177 aa3.52□□□□□ -1.85
LDLR-212ENST00000560467 KRTAP5-8O75690 187 aa3.49□□□□□ -1.85
LDLR-212ENST00000560467 KRTAP6-1Q3LI64 71 aa3.46□□□□□ -1.86
LDLR-212ENST00000560467 KRTAP9-4Q9BYQ2 154 aa3.4□□□□□ -1.87
LDLR-212ENST00000560467 KRTAP6-2Q3LI66 62 aa3.35□□□□□ -1.87
LDLR-212ENST00000560467 KRTAP9-9Q9BYP9 154 aa3.34□□□□□ -1.87
LDLR-212ENST00000560467 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
LDLR-212ENST00000560467 MT3P25713 68 aa3.29□□□□□ -1.88
LDLR-212ENST00000560467 KRTAP5-1Q6L8H4 278 aa3.21□□□□□ -1.9
LDLR-212ENST00000560467 LCE3DQ9BYE3 92 aa3.07□□□□□ -1.92
LDLR-212ENST00000560467 LCE3EQ5T5B0 92 aa2.97□□□□□ -1.93
LDLR-212ENST00000560467 LCE1EQ5T753 118 aa2.92□□□□□ -1.94
LDLR-212ENST00000560467 KRTAP4-2Q9BYR5 136 aa2.84□□□□□ -1.95
LDLR-212ENST00000560467 LCE1BQ5T7P3 118 aa2.83□□□□□ -1.96
LDLR-212ENST00000560467 LCE1CQ5T751 118 aa2.72□□□□□ -1.97
LDLR-212ENST00000560467 KRTAP4-12Q9BQ66 201 aa2.71□□□□□ -1.98
LDLR-212ENST00000560467 KRTAP5-11Q6L8G4 156 aa2.53□□□□□ -2
LDLR-212ENST00000560467 PRM1P04553 51 aa2.49□□□□□ -2.01
LDLR-212ENST00000560467 LCE1FQ5T754 118 aa2.47□□□□□ -2.01
LDLR-212ENST00000560467 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.44□□□□□ -2.02
LDLR-212ENST00000560467 PHGR1C9JFL3 82 aa2.43□□□□□ -2.02
LDLR-212ENST00000560467 KRTAP21-2Q3LI59 83 aa2.26□□□□□ -2.05
LDLR-212ENST00000560467 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
LDLR-212ENST00000560467 MUC19Q7Z5P9 8384 aa2.08□□□□□ -2.08
LDLR-212ENST00000560467 KRTAP21-1Q3LI58 79 aa1.83□□□□□ -2.12
LDLR-212ENST00000560467 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 309.1 ms