RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 KRTAP8-1Q8IUC2 63 aa3.73□□□□□ -1.81
LDLR-211ENST00000560173 SPRR2FQ96RM1 72 aa3.73□□□□□ -1.81
LDLR-211ENST00000560173 KRTAP25-1Q3LHN0 102 aa3.72□□□□□ -1.81
LDLR-211ENST00000560173 KRTAP4-8A0A0G2JLE6 195 aa3.71□□□□□ -1.82
LDLR-211ENST00000560173 KRTAP4-8Q9BYQ9 185 aa3.71□□□□□ -1.82
LDLR-211ENST00000560173 LCE1AQ5T7P2 110 aa3.68□□□□□ -1.82
LDLR-211ENST00000560173 C10orf95Q9H7T3 257 aa3.67□□□□□ -1.82
LDLR-211ENST00000560173 TNP1P09430 55 aa3.66□□□□□ -1.82
LDLR-211ENST00000560173 SPRR2DP22532 72 aa3.66□□□□□ -1.82
LDLR-211ENST00000560173 PP632Q6XCG6 107 aa3.65□□□□□ -1.83
LDLR-211ENST00000560173 LCE3BQ5TA77 95 aa3.6□□□□□ -1.83
LDLR-211ENST00000560173 DSTQ03001 7570 aaKnown RBP3.57□□□□□ -1.84
LDLR-211ENST00000560173 KRTAP19-7Q3SYF9 63 aa3.52□□□□□ -1.85
LDLR-211ENST00000560173 MT1EP04732 61 aa3.49□□□□□ -1.85
LDLR-211ENST00000560173 NDUFAF8A1L188 74 aa3.48□□□□□ -1.85
LDLR-211ENST00000560173 KRTAP4-9Q9BYQ8 210 aa3.48□□□□□ -1.85
LDLR-211ENST00000560173 KRTAP19-5Q3LI72 72 aa3.46□□□□□ -1.86
LDLR-211ENST00000560173 LCE3AQ5TA76 89 aa3.43□□□□□ -1.86
LDLR-211ENST00000560173 LCE5AQ5TCM9 118 aa3.42□□□□□ -1.86
LDLR-211ENST00000560173 KRTAP19-3Q7Z4W3 81 aa3.42□□□□□ -1.86
LDLR-211ENST00000560173 MT1GP13640 62 aa3.35□□□□□ -1.87
LDLR-211ENST00000560173 MT1LQ93083 61 aa3.35□□□□□ -1.87
LDLR-211ENST00000560173 LCE1DQ5T752 114 aa3.34□□□□□ -1.87
LDLR-211ENST00000560173 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
LDLR-211ENST00000560173 KRTAP5-10Q6L8G5 202 aa3.32□□□□□ -1.88
LDLR-211ENST00000560173 HMCN1Q96RW7 5635 aa3.32□□□□□ -1.88
LDLR-211ENST00000560173 KRTAP12-3P60328 96 aa3.3□□□□□ -1.88
LDLR-211ENST00000560173 MT1MQ8N339 61 aa3.3□□□□□ -1.88
LDLR-211ENST00000560173 KRTAP15-1Q3LI76 137 aa3.27□□□□□ -1.89
LDLR-211ENST00000560173 KRTAP19-4Q3LI73 84 aa3.25□□□□□ -1.89
LDLR-211ENST00000560173 KRTAP5-7Q6L8G8 165 aa3.25□□□□□ -1.89
LDLR-211ENST00000560173 MT4P47944 62 aa3.24□□□□□ -1.89
LDLR-211ENST00000560173 KRTAP4-3Q9BYR4 195 aa3.23□□□□□ -1.89
LDLR-211ENST00000560173 LCE4AQ5TA78 99 aa3.2□□□□□ -1.9
LDLR-211ENST00000560173 KRTAP4-7Q9BYR0 210 aa3.18□□□□□ -1.9
LDLR-211ENST00000560173 SPRR5A0A1B0GTR4 108 aa3.16□□□□□ -1.9
LDLR-211ENST00000560173 KRTAP5-3Q6L8H2 238 aa3.14□□□□□ -1.91
LDLR-211ENST00000560173 KRTAP4-6Q9BYQ5 205 aa3.11□□□□□ -1.91
LDLR-211ENST00000560173 KRTAP5-4Q6L8H1 288 aa3.09□□□□□ -1.91
LDLR-211ENST00000560173 LCE3CQ5T5A8 94 aa3.08□□□□□ -1.92
LDLR-211ENST00000560173 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
LDLR-211ENST00000560173 LOC100996750A0A140TA64 210 aa3.01□□□□□ -1.93
LDLR-211ENST00000560173 INE1O15225 51 aa2.98□□□□□ -1.93
LDLR-211ENST00000560173 KRTAP20-2Q3LI61 65 aa2.93□□□□□ -1.94
LDLR-211ENST00000560173 SYNE1Q8NF91 8797 aaKnown RBP2.91□□□□□ -1.94
LDLR-211ENST00000560173 KRTAP12-4P60329 112 aa2.9□□□□□ -1.95
LDLR-211ENST00000560173 KRTAP9-6A8MVA2 160 aa2.89□□□□□ -1.95
LDLR-211ENST00000560173 AHNAKQ09666 5890 aaKnown RBP2.89□□□□□ -1.95
LDLR-211ENST00000560173 MT1AP04731 61 aa2.85□□□□□ -1.95
LDLR-211ENST00000560173 MUC5ACP98088 5654 aa2.85□□□□□ -1.95
LDLR-211ENST00000560173 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
LDLR-211ENST00000560173 KRTAP4-11Q9BYQ6 195 aa2.78□□□□□ -1.96
LDLR-211ENST00000560173 MUC5BQ9HC84 5762 aaPredicted RBP2.76□□□□□ -1.97
LDLR-211ENST00000560173 KRTAP5-8O75690 187 aa2.73□□□□□ -1.97
LDLR-211ENST00000560173 KRTAP5-2Q701N4 177 aa2.73□□□□□ -1.97
LDLR-211ENST00000560173 KRTAP9-4Q9BYQ2 154 aa2.73□□□□□ -1.97
LDLR-211ENST00000560173 KRTAP6-2Q3LI66 62 aa2.67□□□□□ -1.98
LDLR-211ENST00000560173 KRTAP9-9Q9BYP9 154 aa2.63□□□□□ -1.99
LDLR-211ENST00000560173 OBSCNQ5VST9 7968 aa2.62□□□□□ -1.99
LDLR-211ENST00000560173 MT3P25713 68 aa2.59□□□□□ -1.99
LDLR-211ENST00000560173 LCE1FQ5T754 118 aa2.48□□□□□ -2.01
LDLR-211ENST00000560173 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
LDLR-211ENST00000560173 LCE1EQ5T753 118 aa2.36□□□□□ -2.03
LDLR-211ENST00000560173 LCE3DQ9BYE3 92 aa2.34□□□□□ -2.03
LDLR-211ENST00000560173 LCE3EQ5T5B0 92 aa2.29□□□□□ -2.04
LDLR-211ENST00000560173 KRTAP4-2Q9BYR5 136 aa2.23□□□□□ -2.05
LDLR-211ENST00000560173 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
LDLR-211ENST00000560173 LCE1CQ5T751 118 aa2.19□□□□□ -2.06
LDLR-211ENST00000560173 KRTAP4-12Q9BQ66 201 aa2.06□□□□□ -2.08
LDLR-211ENST00000560173 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.02□□□□□ -2.09
LDLR-211ENST00000560173 PRM1P04553 51 aa1.98□□□□□ -2.09
LDLR-211ENST00000560173 KRTAP5-11Q6L8G4 156 aa1.98□□□□□ -2.09
LDLR-211ENST00000560173 PHGR1C9JFL3 82 aa1.95□□□□□ -2.1
LDLR-211ENST00000560173 KRTAP21-2Q3LI59 83 aa1.86□□□□□ -2.11
LDLR-211ENST00000560173 KRTAP4-4Q9BYR3 166 aa1.68□□□□□ -2.14
LDLR-211ENST00000560173 MUC19Q7Z5P9 8384 aa1.64□□□□□ -2.15
LDLR-211ENST00000560173 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
LDLR-211ENST00000560173 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 246.7 ms