RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 MUC12Q9UKN1 5478 aa2.27□□□□□ -2.05
SPG11-220ENST00000559933 LCE3EQ5T5B0 92 aa2.27□□□□□ -2.05
SPG11-220ENST00000559933 CRIPTQ9P021 101 aa2.27□□□□□ -2.05
SPG11-220ENST00000559933 KRTAP19-8Q3LI54 63 aa2.26□□□□□ -2.05
SPG11-220ENST00000559933 V9GYY9 64 aa2.25□□□□□ -2.05
SPG11-220ENST00000559933 OBSCNQ5VST9 7968 aa2.24□□□□□ -2.05
SPG11-220ENST00000559933 LCE3AQ5TA76 89 aa2.24□□□□□ -2.05
SPG11-220ENST00000559933 KRTAP2-3P0C7H8 128 aa2.22□□□□□ -2.05
SPG11-220ENST00000559933 KRTAP2-4Q9BYR9 128 aa2.22□□□□□ -2.05
SPG11-220ENST00000559933 A6NED7 52 aa2.21□□□□□ -2.06
SPG11-220ENST00000559933 UQCR11O14957 56 aa2.21□□□□□ -2.06
SPG11-220ENST00000559933 KRTAP12-1P59990 96 aa2.21□□□□□ -2.06
SPG11-220ENST00000559933 MIR22HGQ0VDD5 57 aa2.21□□□□□ -2.06
SPG11-220ENST00000559933 SPINT4Q6UDR6 99 aa2.21□□□□□ -2.06
SPG11-220ENST00000559933 KRTAP4-3Q9BYR4 195 aa2.2□□□□□ -2.06
SPG11-220ENST00000559933 MT1XP80297 61 aa2.18□□□□□ -2.06
SPG11-220ENST00000559933 PLAC4Q8WY50 150 aa2.18□□□□□ -2.06
SPG11-220ENST00000559933 KRTAP19-6Q3LI70 58 aa2.17□□□□□ -2.06
SPG11-220ENST00000559933 A6NN06 94 aa2.16□□□□□ -2.06
SPG11-220ENST00000559933 CAMK2N1Q7Z7J9 78 aa2.15□□□□□ -2.07
SPG11-220ENST00000559933 AHNAK2Q8IVF2 5795 aa2.15□□□□□ -2.07
SPG11-220ENST00000559933 CDC42SE1Q9NRR8 79 aa2.14□□□□□ -2.07
SPG11-220ENST00000559933 BRK1Q8WUW1 75 aa2.13□□□□□ -2.07
SPG11-220ENST00000559933 SPRR5A0A1B0GTR4 108 aa2.11□□□□□ -2.07
SPG11-220ENST00000559933 KRTAP2-1Q9BYU5 128 aa2.11□□□□□ -2.07
SPG11-220ENST00000559933 C10orf95Q9H7T3 257 aa2.11□□□□□ -2.07
SPG11-220ENST00000559933 PRO2289Q9P1D8 64 aa2.09□□□□□ -2.07
SPG11-220ENST00000559933 MDN1Q9NU22 5596 aa2.08□□□□□ -2.08
SPG11-220ENST00000559933 K7ERS5 55 aa2.07□□□□□ -2.08
SPG11-220ENST00000559933 ROMO1P60602 79 aa2.02□□□□□ -2.09
SPG11-220ENST00000559933 TNP1P09430 55 aa2□□□□□ -2.09
SPG11-220ENST00000559933 DSTQ03001 7570 aaKnown RBP1.99□□□□□ -2.09
SPG11-220ENST00000559933 KRTAP5-7Q6L8G8 165 aa1.99□□□□□ -2.09
SPG11-220ENST00000559933 KRTAP5-5Q701N2 237 aaPredicted RBP1.99□□□□□ -2.09
SPG11-220ENST00000559933 KRTAP8-1Q8IUC2 63 aa1.99□□□□□ -2.09
SPG11-220ENST00000559933 PRO0628Q9UI54 55 aa1.99□□□□□ -2.09
SPG11-220ENST00000559933 PMAIP1Q13794 54 aa1.97□□□□□ -2.09
SPG11-220ENST00000559933 KRTAP25-1Q3LHN0 102 aa1.97□□□□□ -2.09
SPG11-220ENST00000559933 KRTAP19-5Q3LI72 72 aa1.97□□□□□ -2.09
SPG11-220ENST00000559933 KRTAP5-10Q6L8G5 202 aa1.97□□□□□ -2.09
SPG11-220ENST00000559933 KRTAP5-2Q701N4 177 aa1.97□□□□□ -2.09
SPG11-220ENST00000559933 AHNAKQ09666 5890 aaKnown RBP1.96□□□□□ -2.1
SPG11-220ENST00000559933 KRTAP19-7Q3SYF9 63 aa1.95□□□□□ -2.1
SPG11-220ENST00000559933 SPRR2FQ96RM1 72 aa1.95□□□□□ -2.1
SPG11-220ENST00000559933 LCE1CQ5T751 118 aa1.94□□□□□ -2.1
SPG11-220ENST00000559933 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
SPG11-220ENST00000559933 MT1EP04732 61 aa1.92□□□□□ -2.1
SPG11-220ENST00000559933 HMCN1Q96RW7 5635 aa1.89□□□□□ -2.11
SPG11-220ENST00000559933 SPRR2EP22531 72 aa1.89□□□□□ -2.11
SPG11-220ENST00000559933 SPRR2BP35325 72 aa1.89□□□□□ -2.11
SPG11-220ENST00000559933 SPRR2AP35326 72 aa1.89□□□□□ -2.11
SPG11-220ENST00000559933 KRTAP12-3P60328 96 aa1.89□□□□□ -2.11
SPG11-220ENST00000559933 PP632Q6XCG6 107 aa1.87□□□□□ -2.11
SPG11-220ENST00000559933 KTN1-AS1Q86SY8 53 aa1.87□□□□□ -2.11
SPG11-220ENST00000559933 MT1LQ93083 61 aa1.87□□□□□ -2.11
SPG11-220ENST00000559933 KRTAP19-3Q7Z4W3 81 aa1.84□□□□□ -2.11
SPG11-220ENST00000559933 MUC5BQ9HC84 5762 aaPredicted RBP1.81□□□□□ -2.12
SPG11-220ENST00000559933 SPRR2DP22532 72 aa1.81□□□□□ -2.12
SPG11-220ENST00000559933 MT1MQ8N339 61 aa1.81□□□□□ -2.12
SPG11-220ENST00000559933 LCE3DQ9BYE3 92 aa1.81□□□□□ -2.12
SPG11-220ENST00000559933 MT1GP13640 62 aa1.78□□□□□ -2.12
SPG11-220ENST00000559933 MUC5ACP98088 5654 aa1.74□□□□□ -2.13
SPG11-220ENST00000559933 KRTAP5-8O75690 187 aa1.65□□□□□ -2.15
SPG11-220ENST00000559933 MT4P47944 62 aa1.6□□□□□ -2.15
SPG11-220ENST00000559933 MUC19Q7Z5P9 8384 aa1.59□□□□□ -2.15
SPG11-220ENST00000559933 KRTAP6-1Q3LI64 71 aa1.59□□□□□ -2.15
SPG11-220ENST00000559933 MT1AP04731 61 aa1.56□□□□□ -2.16
SPG11-220ENST00000559933 SYNE1Q8NF91 8797 aaKnown RBP1.55□□□□□ -2.16
SPG11-220ENST00000559933 KRTAP20-2Q3LI61 65 aa1.51□□□□□ -2.17
SPG11-220ENST00000559933 KRTAP12-4P60329 112 aa1.5□□□□□ -2.17
SPG11-220ENST00000559933 LUZP6Q538Z0 58 aa1.5□□□□□ -2.17
SPG11-220ENST00000559933 KRTAP6-2Q3LI66 62 aa1.48□□□□□ -2.17
SPG11-220ENST00000559933 KRTAP21-2Q3LI59 83 aa1.36□□□□□ -2.19
SPG11-220ENST00000559933 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
SPG11-220ENST00000559933 INE1O15225 51 aa1.12□□□□□ -2.23
SPG11-220ENST00000559933 PRM1P04553 51 aa1.08□□□□□ -2.24
SPG11-220ENST00000559933 KRTAP21-1Q3LI58 79 aa0.9□□□□□ -2.27
SPG11-220ENST00000559933 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 102.5 ms