RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 LCE5AQ5TCM9 118 aa7.82□□□□□ -1.16
SNX1-206ENST00000559389 KRTAP23-1A1A580 65 aa7.81□□□□□ -1.16
SNX1-206ENST00000559389 KRTAP12-3P60328 96 aa7.8□□□□□ -1.16
SNX1-206ENST00000559389 MT1LQ93083 61 aa7.77□□□□□ -1.17
SNX1-206ENST00000559389 KRTAP2-3P0C7H8 128 aa7.74□□□□□ -1.17
SNX1-206ENST00000559389 KRTAP2-4Q9BYR9 128 aa7.74□□□□□ -1.17
SNX1-206ENST00000559389 MT1GP13640 62 aa7.71□□□□□ -1.18
SNX1-206ENST00000559389 PP632Q6XCG6 107 aa7.65□□□□□ -1.18
SNX1-206ENST00000559389 LCE3BQ5TA77 95 aa7.61□□□□□ -1.19
SNX1-206ENST00000559389 MT1MQ8N339 61 aa7.61□□□□□ -1.19
SNX1-206ENST00000559389 KRTAP2-2Q9BYT5 123 aa7.53□□□□□ -1.2
SNX1-206ENST00000559389 KRTAP2-1Q9BYU5 128 aa7.53□□□□□ -1.2
SNX1-206ENST00000559389 KRTAP15-1Q3LI76 137 aa7.45□□□□□ -1.22
SNX1-206ENST00000559389 PMAIP1Q13794 54 aa7.4□□□□□ -1.22
SNX1-206ENST00000559389 KRTAP4-3Q9BYR4 195 aa7.4□□□□□ -1.22
SNX1-206ENST00000559389 KRTAP4-7Q9BYR0 210 aa7.39□□□□□ -1.23
SNX1-206ENST00000559389 KRTAP19-4Q3LI73 84 aa7.37□□□□□ -1.23
SNX1-206ENST00000559389 DSTQ03001 7570 aaKnown RBP7.33□□□□□ -1.24
SNX1-206ENST00000559389 PRO0628Q9UI54 55 aa7.31□□□□□ -1.24
SNX1-206ENST00000559389 LCE3CQ5T5A8 94 aa7.22□□□□□ -1.25
SNX1-206ENST00000559389 PRAC1Q96KF2 57 aa7.05□□□□□ -1.28
SNX1-206ENST00000559389 LOC100996750A0A140TA64 210 aa7.03□□□□□ -1.28
SNX1-206ENST00000559389 KRTAP4-6Q9BYQ5 205 aa7.03□□□□□ -1.28
SNX1-206ENST00000559389 LCE4AQ5TA78 99 aa6.99□□□□□ -1.29
SNX1-206ENST00000559389 KRTAP5-4Q6L8H1 288 aa6.98□□□□□ -1.29
SNX1-206ENST00000559389 KRTAP5-5Q701N2 237 aaPredicted RBP6.95□□□□□ -1.3
SNX1-206ENST00000559389 KRTAP4-9Q9BYQ8 210 aa6.92□□□□□ -1.3
SNX1-206ENST00000559389 KTN1-AS1Q86SY8 53 aa6.89□□□□□ -1.31
SNX1-206ENST00000559389 LCE1DQ5T752 114 aa6.86□□□□□ -1.31
SNX1-206ENST00000559389 KRTAP9-6A8MVA2 160 aa6.83□□□□□ -1.32
SNX1-206ENST00000559389 MT4P47944 62 aa6.83□□□□□ -1.32
SNX1-206ENST00000559389 MT1AP04731 61 aa6.62□□□□□ -1.35
SNX1-206ENST00000559389 HMCN1Q96RW7 5635 aa6.61□□□□□ -1.35
SNX1-206ENST00000559389 KRTAP12-4P60329 112 aa6.59□□□□□ -1.35
SNX1-206ENST00000559389 SPRR5A0A1B0GTR4 108 aa6.56□□□□□ -1.36
SNX1-206ENST00000559389 KRTAP20-2Q3LI61 65 aa6.54□□□□□ -1.36
SNX1-206ENST00000559389 KRTAP6-1Q3LI64 71 aa6.53□□□□□ -1.36
SNX1-206ENST00000559389 SVIPQ8NHG7 77 aa6.53□□□□□ -1.36
SNX1-206ENST00000559389 SYNE1Q8NF91 8797 aaKnown RBP6.51□□□□□ -1.37
SNX1-206ENST00000559389 KRTAP5-3Q6L8H2 238 aa6.33□□□□□ -1.4
SNX1-206ENST00000559389 KRTAP9-4Q9BYQ2 154 aa6.31□□□□□ -1.4
SNX1-206ENST00000559389 AHNAK2Q8IVF2 5795 aa6.22□□□□□ -1.41
SNX1-206ENST00000559389 KRTAP5-2Q701N4 177 aa6.22□□□□□ -1.41
SNX1-206ENST00000559389 GPR98Q8WXG9 6306 aa6.2□□□□□ -1.42
SNX1-206ENST00000559389 KRTAP6-2Q3LI66 62 aa6.14□□□□□ -1.43
SNX1-206ENST00000559389 KRTAP4-12Q9BQ66 201 aa6.13□□□□□ -1.43
SNX1-206ENST00000559389 KRTAP5-10Q6L8G5 202 aa6.12□□□□□ -1.43
SNX1-206ENST00000559389 MT3P25713 68 aa6□□□□□ -1.45
SNX1-206ENST00000559389 KRTAP9-9Q9BYP9 154 aa5.96□□□□□ -1.46
SNX1-206ENST00000559389 LUZP6Q538Z0 58 aa5.83□□□□□ -1.48
SNX1-206ENST00000559389 KRTAP4-11Q9BYQ6 195 aa5.83□□□□□ -1.48
SNX1-206ENST00000559389 KRTAP5-7Q6L8G8 165 aa5.82□□□□□ -1.48
SNX1-206ENST00000559389 KRTAP5-8O75690 187 aa5.64□□□□□ -1.51
SNX1-206ENST00000559389 OBSCNQ5VST9 7968 aa5.54□□□□□ -1.52
SNX1-206ENST00000559389 KRTAP5-1Q6L8H4 278 aa5.46□□□□□ -1.54
SNX1-206ENST00000559389 KRTAP4-2Q9BYR5 136 aa5.45□□□□□ -1.54
SNX1-206ENST00000559389 LCE1EQ5T753 118 aa5.41□□□□□ -1.54
SNX1-206ENST00000559389 LCE3DQ9BYE3 92 aa5.29□□□□□ -1.56
SNX1-206ENST00000559389 H3BS24 57 aa5.21□□□□□ -1.58
SNX1-206ENST00000559389 NDUFAF8A1L188 74 aa5.18□□□□□ -1.58
SNX1-206ENST00000559389 MUC5ACP98088 5654 aa5.18□□□□□ -1.58
SNX1-206ENST00000559389 LCE3EQ5T5B0 92 aa5.07□□□□□ -1.6
SNX1-206ENST00000559389 LCE1BQ5T7P3 118 aa5.03□□□□□ -1.6
SNX1-206ENST00000559389 LCE1CQ5T751 118 aa5.02□□□□□ -1.61
SNX1-206ENST00000559389 MUC5BQ9HC84 5762 aaPredicted RBP4.97□□□□□ -1.61
SNX1-206ENST00000559389 AHNAKQ09666 5890 aaKnown RBP4.95□□□□□ -1.62
SNX1-206ENST00000559389 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.64□□□□□ -1.67
SNX1-206ENST00000559389 KRTAP5-11Q6L8G4 156 aa4.52□□□□□ -1.69
SNX1-206ENST00000559389 A0A0A0MQY5 61 aa4.32□□□□□ -1.72
SNX1-206ENST00000559389 KRTAP21-2Q3LI59 83 aa4.3□□□□□ -1.72
SNX1-206ENST00000559389 INE1O15225 51 aa4.25□□□□□ -1.73
SNX1-206ENST00000559389 LCE1FQ5T754 118 aa4.25□□□□□ -1.73
SNX1-206ENST00000559389 PRM1P04553 51 aa4.09□□□□□ -1.75
SNX1-206ENST00000559389 PHGR1C9JFL3 82 aa3.88□□□□□ -1.79
SNX1-206ENST00000559389 KRTAP4-4Q9BYR3 166 aa3.84□□□□□ -1.79
SNX1-206ENST00000559389 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
SNX1-206ENST00000559389 KRTAP21-1Q3LI58 79 aa2.67□□□□□ -1.98
SNX1-206ENST00000559389 MUC16Q8WXI7 14507 aa2.48□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 55.1 ms