RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 A6NED7 52 aa5.46□□□□□ -1.54
USP3-205ENST00000557884 LCE1AQ5T7P2 110 aa5.43□□□□□ -1.54
USP3-205ENST00000557884 H3BS24 57 aa5.42□□□□□ -1.54
USP3-205ENST00000557884 TNP1P09430 55 aa5.42□□□□□ -1.54
USP3-205ENST00000557884 K7ERS5 55 aa5.41□□□□□ -1.54
USP3-205ENST00000557884 KRTAP19-7Q3SYF9 63 aa5.37□□□□□ -1.55
USP3-205ENST00000557884 KRTAP20-1Q3LI63 56 aa5.34□□□□□ -1.55
USP3-205ENST00000557884 LCE3AQ5TA76 89 aa5.34□□□□□ -1.55
USP3-205ENST00000557884 KRTAP19-5Q3LI72 72 aa5.33□□□□□ -1.56
USP3-205ENST00000557884 MT1EP04732 61 aa5.32□□□□□ -1.56
USP3-205ENST00000557884 SPRR2DP22532 72 aa5.3□□□□□ -1.56
USP3-205ENST00000557884 KRTAP2-3P0C7H8 128 aa5.24□□□□□ -1.57
USP3-205ENST00000557884 KRTAP2-4Q9BYR9 128 aa5.24□□□□□ -1.57
USP3-205ENST00000557884 KRTAP25-1Q3LHN0 102 aa5.23□□□□□ -1.57
USP3-205ENST00000557884 CDC42SE1Q9NRR8 79 aa5.23□□□□□ -1.57
USP3-205ENST00000557884 KRTAP19-3Q7Z4W3 81 aa5.21□□□□□ -1.58
USP3-205ENST00000557884 MT1LQ93083 61 aa5.13□□□□□ -1.59
USP3-205ENST00000557884 KRTAP12-3P60328 96 aa5.12□□□□□ -1.59
USP3-205ENST00000557884 ROMO1P60602 79 aa5.11□□□□□ -1.59
USP3-205ENST00000557884 MT1GP13640 62 aa5.1□□□□□ -1.59
USP3-205ENST00000557884 KRTAP2-2Q9BYT5 123 aa5.09□□□□□ -1.59
USP3-205ENST00000557884 KRTAP2-1Q9BYU5 128 aa5.09□□□□□ -1.59
USP3-205ENST00000557884 PP632Q6XCG6 107 aa5.05□□□□□ -1.6
USP3-205ENST00000557884 MT1MQ8N339 61 aa5.04□□□□□ -1.6
USP3-205ENST00000557884 KRTAP23-1A1A580 65 aa5□□□□□ -1.61
USP3-205ENST00000557884 DSTQ03001 7570 aaKnown RBP5□□□□□ -1.61
USP3-205ENST00000557884 BRK1Q8WUW1 75 aa4.98□□□□□ -1.61
USP3-205ENST00000557884 KRTAP4-3Q9BYR4 195 aa4.96□□□□□ -1.62
USP3-205ENST00000557884 KRTAP15-1Q3LI76 137 aa4.86□□□□□ -1.63
USP3-205ENST00000557884 LCE3CQ5T5A8 94 aa4.72□□□□□ -1.65
USP3-205ENST00000557884 PMAIP1Q13794 54 aa4.68□□□□□ -1.66
USP3-205ENST00000557884 MT4P47944 62 aa4.64□□□□□ -1.67
USP3-205ENST00000557884 KRTAP5-4Q6L8H1 288 aa4.63□□□□□ -1.67
USP3-205ENST00000557884 HMCN1Q96RW7 5635 aa4.61□□□□□ -1.67
USP3-205ENST00000557884 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.58□□□□□ -1.68
USP3-205ENST00000557884 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
USP3-205ENST00000557884 PRO0628Q9UI54 55 aa4.52□□□□□ -1.69
USP3-205ENST00000557884 PRAC1Q96KF2 57 aa4.5□□□□□ -1.69
USP3-205ENST00000557884 KRTAP9-6A8MVA2 160 aa4.48□□□□□ -1.69
USP3-205ENST00000557884 SYNE1Q8NF91 8797 aaKnown RBP4.44□□□□□ -1.7
USP3-205ENST00000557884 KRTAP5-11Q6L8G4 156 aa4.42□□□□□ -1.7
USP3-205ENST00000557884 GPR98Q8WXG9 6306 aa4.42□□□□□ -1.7
USP3-205ENST00000557884 KRTAP12-4P60329 112 aa4.4□□□□□ -1.71
USP3-205ENST00000557884 KRTAP20-2Q3LI61 65 aa4.38□□□□□ -1.71
USP3-205ENST00000557884 AHNAK2Q8IVF2 5795 aa4.35□□□□□ -1.71
USP3-205ENST00000557884 SPRR5A0A1B0GTR4 108 aa4.35□□□□□ -1.71
USP3-205ENST00000557884 MT1AP04731 61 aa4.35□□□□□ -1.71
USP3-205ENST00000557884 KRTAP6-1Q3LI64 71 aa4.34□□□□□ -1.71
USP3-205ENST00000557884 KTN1-AS1Q86SY8 53 aa4.28□□□□□ -1.72
USP3-205ENST00000557884 KRTAP5-10Q6L8G5 202 aa4.15□□□□□ -1.75
USP3-205ENST00000557884 SVIPQ8NHG7 77 aa4.12□□□□□ -1.75
USP3-205ENST00000557884 KRTAP5-2Q701N4 177 aa4.11□□□□□ -1.75
USP3-205ENST00000557884 KRTAP6-2Q3LI66 62 aa4.09□□□□□ -1.75
USP3-205ENST00000557884 LCE1EQ5T753 118 aa4.02□□□□□ -1.77
USP3-205ENST00000557884 MT3P25713 68 aa3.96□□□□□ -1.78
USP3-205ENST00000557884 KRTAP5-7Q6L8G8 165 aa3.94□□□□□ -1.78
USP3-205ENST00000557884 KRTAP5-1Q6L8H4 278 aa3.92□□□□□ -1.78
USP3-205ENST00000557884 KRTAP4-4Q9BYR3 166 aa3.8□□□□□ -1.8
USP3-205ENST00000557884 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
USP3-205ENST00000557884 KRTAP5-8O75690 187 aa3.78□□□□□ -1.8
USP3-205ENST00000557884 LUZP6Q538Z0 58 aa3.71□□□□□ -1.82
USP3-205ENST00000557884 MUC5ACP98088 5654 aa3.66□□□□□ -1.82
USP3-205ENST00000557884 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
USP3-205ENST00000557884 AHNAKQ09666 5890 aaKnown RBP3.51□□□□□ -1.85
USP3-205ENST00000557884 LCE3DQ9BYE3 92 aa3.46□□□□□ -1.86
USP3-205ENST00000557884 LCE1BQ5T7P3 118 aa3.4□□□□□ -1.87
USP3-205ENST00000557884 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
USP3-205ENST00000557884 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
USP3-205ENST00000557884 NDUFAF8A1L188 74 aa3.24□□□□□ -1.89
USP3-205ENST00000557884 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
USP3-205ENST00000557884 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
USP3-205ENST00000557884 A0A0A0MQY5 61 aa2.65□□□□□ -1.99
USP3-205ENST00000557884 PRM1P04553 51 aa2.65□□□□□ -1.99
USP3-205ENST00000557884 INE1O15225 51 aa2.59□□□□□ -1.99
USP3-205ENST00000557884 PHGR1C9JFL3 82 aa2.56□□□□□ -2
USP3-205ENST00000557884 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
USP3-205ENST00000557884 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
USP3-205ENST00000557884 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 76.6 ms