RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 SPATA8Q6RVD6 105 aa5.26□□□□□ -1.57
TMEM260-215ENST00000557626 LINC01554Q52M75 96 aa5.24□□□□□ -1.57
TMEM260-215ENST00000557626 PRR15LQ9BU68 103 aa5.22□□□□□ -1.57
TMEM260-215ENST00000557626 AHNAKQ09666 5890 aaKnown RBP5.19□□□□□ -1.58
TMEM260-215ENST00000557626 PSPHP1O15172 72 aa5.18□□□□□ -1.58
TMEM260-215ENST00000557626 KRTAP10-7P60409 375 aaPredicted RBP5.18□□□□□ -1.58
TMEM260-215ENST00000557626 V9GYY9 64 aa5.17□□□□□ -1.58
TMEM260-215ENST00000557626 A8MU10 97 aa5.16□□□□□ -1.58
TMEM260-215ENST00000557626 PLAC4Q8WY50 150 aa5.16□□□□□ -1.58
TMEM260-215ENST00000557626 A0A0D9SG42 100 aa5.15□□□□□ -1.59
TMEM260-215ENST00000557626 KRTAP10-12P60413 245 aa5.14□□□□□ -1.59
TMEM260-215ENST00000557626 KRTAP12-1P59990 96 aa5.12□□□□□ -1.59
TMEM260-215ENST00000557626 UQCR11O14957 56 aa5.09□□□□□ -1.59
TMEM260-215ENST00000557626 KRTAP5-4Q6L8H1 288 aa5.09□□□□□ -1.59
TMEM260-215ENST00000557626 KRTAP19-3Q7Z4W3 81 aa5.07□□□□□ -1.6
TMEM260-215ENST00000557626 MIR22HGQ0VDD5 57 aa5.03□□□□□ -1.6
TMEM260-215ENST00000557626 MUC5ACP98088 5654 aa5.02□□□□□ -1.61
TMEM260-215ENST00000557626 SPINT4Q6UDR6 99 aa5.02□□□□□ -1.61
TMEM260-215ENST00000557626 MUC5BQ9HC84 5762 aaPredicted RBP4.98□□□□□ -1.61
TMEM260-215ENST00000557626 A6NED7 52 aa4.97□□□□□ -1.61
TMEM260-215ENST00000557626 KRTAP15-1Q3LI76 137 aa4.96□□□□□ -1.62
TMEM260-215ENST00000557626 CAMK2N1Q7Z7J9 78 aa4.95□□□□□ -1.62
TMEM260-215ENST00000557626 KRTAP20-2Q3LI61 65 aa4.9□□□□□ -1.63
TMEM260-215ENST00000557626 KRTAP23-1A1A580 65 aa4.89□□□□□ -1.63
TMEM260-215ENST00000557626 MT1EP04732 61 aa4.89□□□□□ -1.63
TMEM260-215ENST00000557626 C10orf95Q9H7T3 257 aa4.89□□□□□ -1.63
TMEM260-215ENST00000557626 CDC42SE1Q9NRR8 79 aa4.87□□□□□ -1.63
TMEM260-215ENST00000557626 KRTAP19-7Q3SYF9 63 aa4.86□□□□□ -1.63
TMEM260-215ENST00000557626 MT1GP13640 62 aa4.82□□□□□ -1.64
TMEM260-215ENST00000557626 PP632Q6XCG6 107 aa4.82□□□□□ -1.64
TMEM260-215ENST00000557626 K7ERS5 55 aa4.74□□□□□ -1.65
TMEM260-215ENST00000557626 MT1MQ8N339 61 aa4.73□□□□□ -1.65
TMEM260-215ENST00000557626 KRTAP5-8O75690 187 aa4.69□□□□□ -1.66
TMEM260-215ENST00000557626 BRK1Q8WUW1 75 aa4.69□□□□□ -1.66
TMEM260-215ENST00000557626 TNP1P09430 55 aa4.67□□□□□ -1.66
TMEM260-215ENST00000557626 KRTAP4-3Q9BYR4 195 aa4.66□□□□□ -1.66
TMEM260-215ENST00000557626 LCE3AQ5TA76 89 aa4.63□□□□□ -1.67
TMEM260-215ENST00000557626 ROMO1P60602 79 aa4.61□□□□□ -1.67
TMEM260-215ENST00000557626 KRTAP25-1Q3LHN0 102 aa4.61□□□□□ -1.67
TMEM260-215ENST00000557626 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
TMEM260-215ENST00000557626 KRTAP19-5Q3LI72 72 aa4.55□□□□□ -1.68
TMEM260-215ENST00000557626 MT1LQ93083 61 aa4.5□□□□□ -1.69
TMEM260-215ENST00000557626 PRO0628Q9UI54 55 aa4.45□□□□□ -1.7
TMEM260-215ENST00000557626 PMAIP1Q13794 54 aa4.43□□□□□ -1.7
TMEM260-215ENST00000557626 SYNE1Q8NF91 8797 aaKnown RBP4.43□□□□□ -1.7
TMEM260-215ENST00000557626 KRTAP12-3P60328 96 aa4.42□□□□□ -1.7
TMEM260-215ENST00000557626 KRTAP5-5Q701N2 237 aaPredicted RBP4.42□□□□□ -1.7
TMEM260-215ENST00000557626 KRTAP5-2Q701N4 177 aa4.39□□□□□ -1.71
TMEM260-215ENST00000557626 OBSCNQ5VST9 7968 aa4.31□□□□□ -1.72
TMEM260-215ENST00000557626 PRAC1Q96KF2 57 aa4.26□□□□□ -1.73
TMEM260-215ENST00000557626 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.22□□□□□ -1.73
TMEM260-215ENST00000557626 KTN1-AS1Q86SY8 53 aa4.14□□□□□ -1.75
TMEM260-215ENST00000557626 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
TMEM260-215ENST00000557626 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
TMEM260-215ENST00000557626 KRTAP5-1Q6L8H4 278 aa4.04□□□□□ -1.76
TMEM260-215ENST00000557626 KRTAP9-6A8MVA2 160 aa3.98□□□□□ -1.77
TMEM260-215ENST00000557626 LCE1EQ5T753 118 aa3.95□□□□□ -1.78
TMEM260-215ENST00000557626 KRTAP6-2Q3LI66 62 aa3.9□□□□□ -1.79
TMEM260-215ENST00000557626 SVIPQ8NHG7 77 aa3.87□□□□□ -1.79
TMEM260-215ENST00000557626 KRTAP6-1Q3LI64 71 aa3.86□□□□□ -1.79
TMEM260-215ENST00000557626 MT1AP04731 61 aa3.8□□□□□ -1.8
TMEM260-215ENST00000557626 MT3P25713 68 aa3.78□□□□□ -1.8
TMEM260-215ENST00000557626 KRTAP4-4Q9BYR3 166 aa3.5□□□□□ -1.85
TMEM260-215ENST00000557626 PHGR1C9JFL3 82 aa3.46□□□□□ -1.86
TMEM260-215ENST00000557626 LCE1BQ5T7P3 118 aa3.41□□□□□ -1.86
TMEM260-215ENST00000557626 LUZP6Q538Z0 58 aa3.36□□□□□ -1.87
TMEM260-215ENST00000557626 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
TMEM260-215ENST00000557626 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
TMEM260-215ENST00000557626 A0A0A0MQY5 61 aa3.2□□□□□ -1.9
TMEM260-215ENST00000557626 NDUFAF8A1L188 74 aa3.17□□□□□ -1.9
TMEM260-215ENST00000557626 LCE3DQ9BYE3 92 aa3.01□□□□□ -1.93
TMEM260-215ENST00000557626 LCE3EQ5T5B0 92 aa2.9□□□□□ -1.95
TMEM260-215ENST00000557626 MUC19Q7Z5P9 8384 aa2.72□□□□□ -1.97
TMEM260-215ENST00000557626 KRTAP21-1Q3LI58 79 aa2.64□□□□□ -1.99
TMEM260-215ENST00000557626 INE1O15225 51 aa2.55□□□□□ -2
TMEM260-215ENST00000557626 KRTAP21-2Q3LI59 83 aa2.54□□□□□ -2
TMEM260-215ENST00000557626 PRM1P04553 51 aa2.4□□□□□ -2.03
TMEM260-215ENST00000557626 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 55.8 ms