RNA–Protein interactions for RNA: ENST00000557599.5

PRKCH-227, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-227	ENST00000557599	SPRR2B	P35325	72 aa		4.15	□□□□□ -1.75
PRKCH-227	ENST00000557599	SPRR2A	P35326	72 aa		4.15	□□□□□ -1.75
PRKCH-227	ENST00000557599	KRTAP10-7	P60409	375 aa	Predicted RBP	4.15	□□□□□ -1.75
PRKCH-227	ENST00000557599	KRTAP8-1	Q8IUC2	63 aa		4.11	□□□□□ -1.75
PRKCH-227	ENST00000557599	KRTAP2-2	Q9BYT5	123 aa		4.1	□□□□□ -1.75
PRKCH-227	ENST00000557599	KRTAP2-1	Q9BYU5	128 aa		4.1	□□□□□ -1.75
PRKCH-227	ENST00000557599	KRTAP4-8	A0A0G2JLE6	195 aa		4.07	□□□□□ -1.76
PRKCH-227	ENST00000557599	LCE3A	Q5TA76	89 aa		4.07	□□□□□ -1.76
PRKCH-227	ENST00000557599	KRTAP4-8	Q9BYQ9	185 aa		4.07	□□□□□ -1.76
PRKCH-227	ENST00000557599	SPRR2D	P22532	72 aa		4.02	□□□□□ -1.77
PRKCH-227	ENST00000557599	LOC100996750	A0A140TA64	210 aa		3.98	□□□□□ -1.77
PRKCH-227	ENST00000557599	KRTAP4-6	Q9BYQ5	205 aa		3.98	□□□□□ -1.77
PRKCH-227	ENST00000557599	KRTAP15-1	Q3LI76	137 aa		3.95	□□□□□ -1.78
PRKCH-227	ENST00000557599	LCE3B	Q5TA77	95 aa		3.95	□□□□□ -1.78
PRKCH-227	ENST00000557599	KRTAP12-3	P60328	96 aa		3.94	□□□□□ -1.78
PRKCH-227	ENST00000557599	KRTAP19-5	Q3LI72	72 aa		3.92	□□□□□ -1.78
PRKCH-227	ENST00000557599	NDUFAF8	A1L188	74 aa		3.88	□□□□□ -1.79
PRKCH-227	ENST00000557599	KRTAP4-12	Q9BQ66	201 aa		3.88	□□□□□ -1.79
PRKCH-227	ENST00000557599	KRTAP19-7	Q3SYF9	63 aa		3.86	□□□□□ -1.79
PRKCH-227	ENST00000557599	LCE4A	Q5TA78	99 aa		3.85	□□□□□ -1.79
PRKCH-227	ENST00000557599	MT1E	P04732	61 aa		3.83	□□□□□ -1.8
PRKCH-227	ENST00000557599	LCE5A	Q5TCM9	118 aa		3.82	□□□□□ -1.8
PRKCH-227	ENST00000557599	LUZP6	Q538Z0	58 aa		3.81	□□□□□ -1.8
PRKCH-227	ENST00000557599	DST	Q03001	7570 aa	Known RBP	3.79	□□□□□ -1.8
PRKCH-227	ENST00000557599	KRTAP9-4	Q9BYQ2	154 aa		3.79	□□□□□ -1.8
PRKCH-227	ENST00000557599	KRTAP9-9	Q9BYP9	154 aa		3.77	□□□□□ -1.81
PRKCH-227	ENST00000557599	GPR98	Q8WXG9	6306 aa		3.76	□□□□□ -1.81
PRKCH-227	ENST00000557599	KRTAP19-3	Q7Z4W3	81 aa		3.74	□□□□□ -1.81
PRKCH-227	ENST00000557599	MT1L	Q93083	61 aa		3.74	□□□□□ -1.81
PRKCH-227	ENST00000557599	MT1G	P13640	62 aa		3.71	□□□□□ -1.82
PRKCH-227	ENST00000557599	KRTAP4-9	Q9BYQ8	210 aa		3.7	□□□□□ -1.82
PRKCH-227	ENST00000557599	HMCN1	Q96RW7	5635 aa		3.67	□□□□□ -1.82
PRKCH-227	ENST00000557599	LCE3C	Q5T5A8	94 aa		3.66	□□□□□ -1.82
PRKCH-227	ENST00000557599	LCE1D	Q5T752	114 aa		3.65	□□□□□ -1.83
PRKCH-227	ENST00000557599	MT1M	Q8N339	61 aa		3.62	□□□□□ -1.83
PRKCH-227	ENST00000557599	KRTAP5-4	Q6L8H1	288 aa		3.58	□□□□□ -1.84
PRKCH-227	ENST00000557599	AHNAK2	Q8IVF2	5795 aa		3.55	□□□□□ -1.84
PRKCH-227	ENST00000557599	KRTAP4-7	Q9BYR0	210 aa		3.54	□□□□□ -1.84
PRKCH-227	ENST00000557599	KRTAP5-10	Q6L8G5	202 aa		3.52	□□□□□ -1.85
PRKCH-227	ENST00000557599	MT4	P47944	62 aa		3.51	□□□□□ -1.85
PRKCH-227	ENST00000557599	SPRR5	A0A1B0GTR4	108 aa		3.5	□□□□□ -1.85
PRKCH-227	ENST00000557599	KRTAP4-3	Q9BYR4	195 aa		3.47	□□□□□ -1.85
PRKCH-227	ENST00000557599	KRTAP5-7	Q6L8G8	165 aa		3.4	□□□□□ -1.87
PRKCH-227	ENST00000557599	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.38	□□□□□ -1.87
PRKCH-227	ENST00000557599	MT3	P25713	68 aa		3.36	□□□□□ -1.87
PRKCH-227	ENST00000557599	KRTAP5-3	Q6L8H2	238 aa		3.36	□□□□□ -1.87
PRKCH-227	ENST00000557599	KRTAP9-6	A8MVA2	160 aa		3.34	□□□□□ -1.87
PRKCH-227	ENST00000557599	KRTAP20-2	Q3LI61	65 aa		3.33	□□□□□ -1.88
PRKCH-227	ENST00000557599	KRTAP4-11	Q9BYQ6	195 aa		3.27	□□□□□ -1.89
PRKCH-227	ENST00000557599	SYNE1	Q8NF91	8797 aa	Known RBP	3.23	□□□□□ -1.89
PRKCH-227	ENST00000557599	MT1A	P04731	61 aa		3.21	□□□□□ -1.9
PRKCH-227	ENST00000557599	KRTAP12-4	P60329	112 aa		3.19	□□□□□ -1.9
PRKCH-227	ENST00000557599	KRTAP6-1	Q3LI64	71 aa		3.13	□□□□□ -1.91
PRKCH-227	ENST00000557599	KRTAP5-2	Q701N4	177 aa		3.13	□□□□□ -1.91
PRKCH-227	ENST00000557599	KRTAP4-2	Q9BYR5	136 aa		3.12	□□□□□ -1.91
PRKCH-227	ENST00000557599	KRTAP5-8	O75690	187 aa		3.01	□□□□□ -1.93
PRKCH-227	ENST00000557599	MUC5AC	P98088	5654 aa		2.98	□□□□□ -1.93
PRKCH-227	ENST00000557599	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.97	□□□□□ -1.93
PRKCH-227	ENST00000557599	KRTAP6-2	Q3LI66	62 aa		2.92	□□□□□ -1.94
PRKCH-227	ENST00000557599	AHNAK	Q09666	5890 aa	Known RBP	2.92	□□□□□ -1.94
PRKCH-227	ENST00000557599	INE1	O15225	51 aa		2.87	□□□□□ -1.95
PRKCH-227	ENST00000557599	LCE1F	Q5T754	118 aa		2.87	□□□□□ -1.95
PRKCH-227	ENST00000557599	OBSCN	Q5VST9	7968 aa		2.86	□□□□□ -1.95
PRKCH-227	ENST00000557599	KRTAP5-1	Q6L8H4	278 aa		2.81	□□□□□ -1.96
PRKCH-227	ENST00000557599	LCE3D	Q9BYE3	92 aa		2.76	□□□□□ -1.97
PRKCH-227	ENST00000557599	LCE3E	Q5T5B0	92 aa		2.67	□□□□□ -1.98
PRKCH-227	ENST00000557599	LCE1E	Q5T753	118 aa		2.62	□□□□□ -1.99
PRKCH-227	ENST00000557599	LCE1C	Q5T751	118 aa		2.43	□□□□□ -2.02
PRKCH-227	ENST00000557599	LCE1B	Q5T7P3	118 aa		2.43	□□□□□ -2.02
PRKCH-227	ENST00000557599	PRM1	P04553	51 aa		2.25	□□□□□ -2.05
PRKCH-227	ENST00000557599	KRTAP5-11	Q6L8G4	156 aa		2.24	□□□□□ -2.05
PRKCH-227	ENST00000557599	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.24	□□□□□ -2.05
PRKCH-227	ENST00000557599	KRTAP21-2	Q3LI59	83 aa		2.03	□□□□□ -2.08
PRKCH-227	ENST00000557599	PHGR1	C9JFL3	82 aa		1.99	□□□□□ -2.09
PRKCH-227	ENST00000557599	KRTAP4-4	Q9BYR3	166 aa		1.82	□□□□□ -2.12
PRKCH-227	ENST00000557599	MUC19	Q7Z5P9	8384 aa		1.78	□□□□□ -2.13
PRKCH-227	ENST00000557599	KRTAP21-1	Q3LI58	79 aa		1.52	□□□□□ -2.17
PRKCH-227	ENST00000557599	MUC16	Q8WXI7	14507 aa		1.24	□□□□□ -2.21

Retrieved 78 of 20,778 RNA–protein pairs in 31.3 ms