RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 KRTAP13-4Q3LI77 160 aa4.2□□□□□ -1.74
CCDC88C-213ENST00000557455 DSTQ03001 7570 aaKnown RBP4.18□□□□□ -1.74
CCDC88C-213ENST00000557455 H3BS24 57 aa4.17□□□□□ -1.74
CCDC88C-213ENST00000557455 LCE5AQ5TCM9 118 aa4.16□□□□□ -1.74
CCDC88C-213ENST00000557455 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.75
CCDC88C-213ENST00000557455 A0A0D9SG42 100 aa4.13□□□□□ -1.75
CCDC88C-213ENST00000557455 MT1EP04732 61 aa4.13□□□□□ -1.75
CCDC88C-213ENST00000557455 LCE4AQ5TA78 99 aa4.13□□□□□ -1.75
CCDC88C-213ENST00000557455 KRTAP19-3Q7Z4W3 81 aa4.13□□□□□ -1.75
CCDC88C-213ENST00000557455 KTN1-AS1Q86SY8 53 aa4.12□□□□□ -1.75
CCDC88C-213ENST00000557455 LCE1DQ5T752 114 aa4.11□□□□□ -1.75
CCDC88C-213ENST00000557455 KRTAP4-9Q9BYQ8 210 aa4.11□□□□□ -1.75
CCDC88C-213ENST00000557455 GPR98Q8WXG9 6306 aa4.11□□□□□ -1.75
CCDC88C-213ENST00000557455 KRTAP4-7Q9BYR0 210 aa4.08□□□□□ -1.76
CCDC88C-213ENST00000557455 SPINT4Q6UDR6 99 aa4.04□□□□□ -1.76
CCDC88C-213ENST00000557455 MT1GP13640 62 aa4.03□□□□□ -1.76
CCDC88C-213ENST00000557455 KRTAP12-1P59990 96 aa4.03□□□□□ -1.76
CCDC88C-213ENST00000557455 KRTAP19-5Q3LI72 72 aa4.02□□□□□ -1.77
CCDC88C-213ENST00000557455 PP632Q6XCG6 107 aa4□□□□□ -1.77
CCDC88C-213ENST00000557455 ROMO1P60602 79 aa3.99□□□□□ -1.77
CCDC88C-213ENST00000557455 MT1MQ8N339 61 aa3.95□□□□□ -1.78
CCDC88C-213ENST00000557455 MT4P47944 62 aa3.94□□□□□ -1.78
CCDC88C-213ENST00000557455 KRTAP19-4Q3LI73 84 aa3.94□□□□□ -1.78
CCDC88C-213ENST00000557455 PRAC1Q96KF2 57 aa3.93□□□□□ -1.78
CCDC88C-213ENST00000557455 HMCN1Q96RW7 5635 aa3.92□□□□□ -1.78
CCDC88C-213ENST00000557455 MT1LQ93083 61 aa3.92□□□□□ -1.78
CCDC88C-213ENST00000557455 KRTAP4-2Q9BYR5 136 aa3.91□□□□□ -1.78
CCDC88C-213ENST00000557455 C10orf95Q9H7T3 257 aa3.87□□□□□ -1.79
CCDC88C-213ENST00000557455 LCE3AQ5TA76 89 aa3.86□□□□□ -1.79
CCDC88C-213ENST00000557455 KRTAP4-11Q9BYQ6 195 aa3.86□□□□□ -1.79
CCDC88C-213ENST00000557455 KRTAP4-3Q9BYR4 195 aa3.86□□□□□ -1.79
CCDC88C-213ENST00000557455 TNP1P09430 55 aa3.85□□□□□ -1.79
CCDC88C-213ENST00000557455 KRTAP25-1Q3LHN0 102 aa3.85□□□□□ -1.79
CCDC88C-213ENST00000557455 KRTAP5-4Q6L8H1 288 aa3.84□□□□□ -1.79
CCDC88C-213ENST00000557455 KRTAP5-3Q6L8H2 238 aa3.82□□□□□ -1.8
CCDC88C-213ENST00000557455 AHNAK2Q8IVF2 5795 aa3.81□□□□□ -1.8
CCDC88C-213ENST00000557455 KRTAP5-10Q6L8G5 202 aa3.77□□□□□ -1.81
CCDC88C-213ENST00000557455 KRTAP12-3P60328 96 aa3.71□□□□□ -1.82
CCDC88C-213ENST00000557455 KRTAP20-2Q3LI61 65 aa3.64□□□□□ -1.83
CCDC88C-213ENST00000557455 KRTAP5-7Q6L8G8 165 aa3.64□□□□□ -1.83
CCDC88C-213ENST00000557455 KRTAP23-1A1A580 65 aa3.63□□□□□ -1.83
CCDC88C-213ENST00000557455 KRTAP5-5Q701N2 237 aaPredicted RBP3.62□□□□□ -1.83
CCDC88C-213ENST00000557455 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
CCDC88C-213ENST00000557455 KRTAP12-4P60329 112 aa3.59□□□□□ -1.83
CCDC88C-213ENST00000557455 SYNE1Q8NF91 8797 aaKnown RBP3.54□□□□□ -1.84
CCDC88C-213ENST00000557455 KRTAP15-1Q3LI76 137 aa3.42□□□□□ -1.86
CCDC88C-213ENST00000557455 LCE3CQ5T5A8 94 aa3.41□□□□□ -1.86
CCDC88C-213ENST00000557455 MT1AP04731 61 aa3.34□□□□□ -1.87
CCDC88C-213ENST00000557455 KRTAP5-2Q701N4 177 aa3.34□□□□□ -1.87
CCDC88C-213ENST00000557455 KRTAP6-1Q3LI64 71 aa3.33□□□□□ -1.88
CCDC88C-213ENST00000557455 LUZP6Q538Z0 58 aa3.27□□□□□ -1.89
CCDC88C-213ENST00000557455 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
CCDC88C-213ENST00000557455 OBSCNQ5VST9 7968 aa3.21□□□□□ -1.9
CCDC88C-213ENST00000557455 KRTAP6-2Q3LI66 62 aa3.21□□□□□ -1.9
CCDC88C-213ENST00000557455 NDUFAF8A1L188 74 aa3.2□□□□□ -1.9
CCDC88C-213ENST00000557455 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
CCDC88C-213ENST00000557455 MUC5BQ9HC84 5762 aaPredicted RBP3.18□□□□□ -1.9
CCDC88C-213ENST00000557455 A0A0A0MQY5 61 aa3.15□□□□□ -1.91
CCDC88C-213ENST00000557455 MUC5ACP98088 5654 aa3.15□□□□□ -1.91
CCDC88C-213ENST00000557455 AHNAKQ09666 5890 aaKnown RBP3.14□□□□□ -1.91
CCDC88C-213ENST00000557455 MT3P25713 68 aa3.07□□□□□ -1.92
CCDC88C-213ENST00000557455 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
CCDC88C-213ENST00000557455 LCE1EQ5T753 118 aa2.84□□□□□ -1.95
CCDC88C-213ENST00000557455 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.75□□□□□ -1.97
CCDC88C-213ENST00000557455 LCE1BQ5T7P3 118 aa2.7□□□□□ -1.98
CCDC88C-213ENST00000557455 INE1O15225 51 aa2.69□□□□□ -1.98
CCDC88C-213ENST00000557455 LCE1CQ5T751 118 aa2.64□□□□□ -1.99
CCDC88C-213ENST00000557455 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
CCDC88C-213ENST00000557455 LCE3DQ9BYE3 92 aa2.43□□□□□ -2.02
CCDC88C-213ENST00000557455 LCE1FQ5T754 118 aa2.38□□□□□ -2.03
CCDC88C-213ENST00000557455 LCE3EQ5T5B0 92 aa2.33□□□□□ -2.04
CCDC88C-213ENST00000557455 KRTAP4-4Q9BYR3 166 aa2.3□□□□□ -2.04
CCDC88C-213ENST00000557455 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
CCDC88C-213ENST00000557455 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
CCDC88C-213ENST00000557455 PRM1P04553 51 aa2.08□□□□□ -2.08
CCDC88C-213ENST00000557455 MUC19Q7Z5P9 8384 aa1.98□□□□□ -2.09
CCDC88C-213ENST00000557455 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
CCDC88C-213ENST00000557455 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 79.8 ms