RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 KRTAP5-11Q6L8G4 156 aa3.95□□□□□ -1.78
SYNE2-224ENST00000557024 Q1T7F1 81 aa3.94□□□□□ -1.78
SYNE2-224ENST00000557024 LINC01554Q52M75 96 aa3.92□□□□□ -1.78
SYNE2-224ENST00000557024 PSPHP1O15172 72 aa3.91□□□□□ -1.78
SYNE2-224ENST00000557024 PRO2289Q9P1D8 64 aa3.9□□□□□ -1.79
SYNE2-224ENST00000557024 MT1XP80297 61 aa3.89□□□□□ -1.79
SYNE2-224ENST00000557024 UQCR11O14957 56 aa3.88□□□□□ -1.79
SYNE2-224ENST00000557024 SPATA8Q6RVD6 105 aa3.87□□□□□ -1.79
SYNE2-224ENST00000557024 A0A0D9SG42 100 aa3.85□□□□□ -1.79
SYNE2-224ENST00000557024 KRTAP13-4Q3LI77 160 aa3.85□□□□□ -1.79
SYNE2-224ENST00000557024 LCE1EQ5T753 118 aa3.85□□□□□ -1.79
SYNE2-224ENST00000557024 KRTAP12-2P59991 146 aa3.84□□□□□ -1.79
SYNE2-224ENST00000557024 PLAC4Q8WY50 150 aa3.84□□□□□ -1.79
SYNE2-224ENST00000557024 A6NED7 52 aa3.82□□□□□ -1.8
SYNE2-224ENST00000557024 MIR22HGQ0VDD5 57 aa3.81□□□□□ -1.8
SYNE2-224ENST00000557024 DSTQ03001 7570 aaKnown RBP3.8□□□□□ -1.8
SYNE2-224ENST00000557024 SPINT4Q6UDR6 99 aa3.79□□□□□ -1.8
SYNE2-224ENST00000557024 A8MU10 97 aa3.78□□□□□ -1.8
SYNE2-224ENST00000557024 KRTAP10-12P60413 245 aa3.77□□□□□ -1.81
SYNE2-224ENST00000557024 K7ERS5 55 aa3.74□□□□□ -1.81
SYNE2-224ENST00000557024 CAMK2N1Q7Z7J9 78 aa3.74□□□□□ -1.81
SYNE2-224ENST00000557024 KRTAP12-1P59990 96 aa3.71□□□□□ -1.82
SYNE2-224ENST00000557024 LCE3CQ5T5A8 94 aa3.7□□□□□ -1.82
SYNE2-224ENST00000557024 CDC42SE1Q9NRR8 79 aa3.69□□□□□ -1.82
SYNE2-224ENST00000557024 BRK1Q8WUW1 75 aa3.64□□□□□ -1.83
SYNE2-224ENST00000557024 KRTAP5-10Q6L8G5 202 aa3.6□□□□□ -1.83
SYNE2-224ENST00000557024 HMCN1Q96RW7 5635 aa3.6□□□□□ -1.83
SYNE2-224ENST00000557024 AHNAK2Q8IVF2 5795 aa3.59□□□□□ -1.83
SYNE2-224ENST00000557024 MT4P47944 62 aa3.59□□□□□ -1.83
SYNE2-224ENST00000557024 TNP1P09430 55 aa3.52□□□□□ -1.85
SYNE2-224ENST00000557024 KRTAP19-3Q7Z4W3 81 aa3.52□□□□□ -1.85
SYNE2-224ENST00000557024 C10orf95Q9H7T3 257 aa3.52□□□□□ -1.85
SYNE2-224ENST00000557024 KRTAP5-7Q6L8G8 165 aa3.51□□□□□ -1.85
SYNE2-224ENST00000557024 ROMO1P60602 79 aa3.48□□□□□ -1.85
SYNE2-224ENST00000557024 KRTAP19-7Q3SYF9 63 aa3.48□□□□□ -1.85
SYNE2-224ENST00000557024 MT1EP04732 61 aa3.47□□□□□ -1.85
SYNE2-224ENST00000557024 KRTAP5-1Q6L8H4 278 aa3.46□□□□□ -1.86
SYNE2-224ENST00000557024 KRTAP25-1Q3LHN0 102 aa3.45□□□□□ -1.86
SYNE2-224ENST00000557024 PMAIP1Q13794 54 aa3.44□□□□□ -1.86
SYNE2-224ENST00000557024 PRO0628Q9UI54 55 aa3.44□□□□□ -1.86
SYNE2-224ENST00000557024 SPRR5A0A1B0GTR4 108 aa3.43□□□□□ -1.86
SYNE2-224ENST00000557024 KRTAP5-4Q6L8H1 288 aa3.39□□□□□ -1.87
SYNE2-224ENST00000557024 KRTAP9-6A8MVA2 160 aa3.38□□□□□ -1.87
SYNE2-224ENST00000557024 MT1GP13640 62 aa3.38□□□□□ -1.87
SYNE2-224ENST00000557024 LCE3EQ5T5B0 92 aa3.38□□□□□ -1.87
SYNE2-224ENST00000557024 LCE3AQ5TA76 89 aa3.35□□□□□ -1.87
SYNE2-224ENST00000557024 PP632Q6XCG6 107 aa3.35□□□□□ -1.87
SYNE2-224ENST00000557024 MT1MQ8N339 61 aa3.33□□□□□ -1.88
SYNE2-224ENST00000557024 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
SYNE2-224ENST00000557024 KRTAP19-5Q3LI72 72 aa3.31□□□□□ -1.88
SYNE2-224ENST00000557024 KRTAP4-3Q9BYR4 195 aa3.3□□□□□ -1.88
SYNE2-224ENST00000557024 KRTAP20-2Q3LI61 65 aa3.25□□□□□ -1.89
SYNE2-224ENST00000557024 MT1LQ93083 61 aa3.25□□□□□ -1.89
SYNE2-224ENST00000557024 KRTAP12-3P60328 96 aa3.23□□□□□ -1.89
SYNE2-224ENST00000557024 KTN1-AS1Q86SY8 53 aa3.22□□□□□ -1.89
SYNE2-224ENST00000557024 AHNAKQ09666 5890 aaKnown RBP3.12□□□□□ -1.91
SYNE2-224ENST00000557024 KRTAP12-4P60329 112 aa3.1□□□□□ -1.91
SYNE2-224ENST00000557024 KRTAP5-5Q701N2 237 aaPredicted RBP3.08□□□□□ -1.92
SYNE2-224ENST00000557024 MUC5ACP98088 5654 aa3.07□□□□□ -1.92
SYNE2-224ENST00000557024 MUC5BQ9HC84 5762 aaPredicted RBP3□□□□□ -1.93
SYNE2-224ENST00000557024 OBSCNQ5VST9 7968 aa2.99□□□□□ -1.93
SYNE2-224ENST00000557024 KRTAP5-8O75690 187 aa2.98□□□□□ -1.93
SYNE2-224ENST00000557024 SYNE1Q8NF91 8797 aaKnown RBP2.96□□□□□ -1.94
SYNE2-224ENST00000557024 LUZP6Q538Z0 58 aa2.93□□□□□ -1.94
SYNE2-224ENST00000557024 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.95
SYNE2-224ENST00000557024 LCE3DQ9BYE3 92 aa2.89□□□□□ -1.95
SYNE2-224ENST00000557024 KRTAP6-1Q3LI64 71 aa2.78□□□□□ -1.96
SYNE2-224ENST00000557024 MT1AP04731 61 aa2.75□□□□□ -1.97
SYNE2-224ENST00000557024 KRTAP6-2Q3LI66 62 aa2.74□□□□□ -1.97
SYNE2-224ENST00000557024 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
SYNE2-224ENST00000557024 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
SYNE2-224ENST00000557024 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
SYNE2-224ENST00000557024 MUC19Q7Z5P9 8384 aa2.08□□□□□ -2.08
SYNE2-224ENST00000557024 INE1O15225 51 aa2.06□□□□□ -2.08
SYNE2-224ENST00000557024 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
SYNE2-224ENST00000557024 PRM1P04553 51 aa1.8□□□□□ -2.12
SYNE2-224ENST00000557024 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
SYNE2-224ENST00000557024 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 74.7 ms