RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 KMT2DO14686 5537 aa4.29□□□□□ -1.72
SHMT2-218ENST00000555213 MDN1Q9NU22 5596 aa4.28□□□□□ -1.72
SHMT2-218ENST00000555213 KRTAP25-1Q3LHN0 102 aa4.25□□□□□ -1.73
SHMT2-218ENST00000555213 TNP1P09430 55 aa4.24□□□□□ -1.73
SHMT2-218ENST00000555213 SPRR2FQ96RM1 72 aa4.24□□□□□ -1.73
SHMT2-218ENST00000555213 KTN1-AS1Q86SY8 53 aa4.22□□□□□ -1.73
SHMT2-218ENST00000555213 PRAC1Q96KF2 57 aa4.22□□□□□ -1.73
SHMT2-218ENST00000555213 LCE5AQ5TCM9 118 aa4.16□□□□□ -1.74
SHMT2-218ENST00000555213 KRTAP4-7Q9BYR0 210 aa4.16□□□□□ -1.74
SHMT2-218ENST00000555213 KRTAP2-2Q9BYT5 123 aa4.16□□□□□ -1.74
SHMT2-218ENST00000555213 KRTAP2-1Q9BYU5 128 aa4.16□□□□□ -1.74
SHMT2-218ENST00000555213 LCE3AQ5TA76 89 aa4.14□□□□□ -1.75
SHMT2-218ENST00000555213 GPR98Q8WXG9 6306 aa4.14□□□□□ -1.75
SHMT2-218ENST00000555213 SPRR2EP22531 72 aa4.13□□□□□ -1.75
SHMT2-218ENST00000555213 SPRR2BP35325 72 aa4.13□□□□□ -1.75
SHMT2-218ENST00000555213 SPRR2AP35326 72 aa4.13□□□□□ -1.75
SHMT2-218ENST00000555213 KRTAP4-9Q9BYQ8 210 aa4.12□□□□□ -1.75
SHMT2-218ENST00000555213 LCE1AQ5T7P2 110 aa4.06□□□□□ -1.76
SHMT2-218ENST00000555213 PP632Q6XCG6 107 aa4.06□□□□□ -1.76
SHMT2-218ENST00000555213 KRTAP19-7Q3SYF9 63 aa4.05□□□□□ -1.76
SHMT2-218ENST00000555213 SVIPQ8NHG7 77 aa4.05□□□□□ -1.76
SHMT2-218ENST00000555213 KRTAP19-5Q3LI72 72 aa4.04□□□□□ -1.76
SHMT2-218ENST00000555213 MT1EP04732 61 aa4.03□□□□□ -1.76
SHMT2-218ENST00000555213 KRTAP15-1Q3LI76 137 aa4.03□□□□□ -1.76
SHMT2-218ENST00000555213 KRTAP4-11Q9BYQ6 195 aa4.01□□□□□ -1.77
SHMT2-218ENST00000555213 SPRR2DP22532 72 aa3.99□□□□□ -1.77
SHMT2-218ENST00000555213 KRTAP12-3P60328 96 aa3.96□□□□□ -1.78
SHMT2-218ENST00000555213 KRTAP19-3Q7Z4W3 81 aa3.96□□□□□ -1.78
SHMT2-218ENST00000555213 KRTAP4-2Q9BYR5 136 aa3.93□□□□□ -1.78
SHMT2-218ENST00000555213 MT1GP13640 62 aa3.89□□□□□ -1.79
SHMT2-218ENST00000555213 MT1LQ93083 61 aa3.89□□□□□ -1.79
SHMT2-218ENST00000555213 MT1MQ8N339 61 aa3.82□□□□□ -1.8
SHMT2-218ENST00000555213 DSTQ03001 7570 aaKnown RBP3.78□□□□□ -1.8
SHMT2-218ENST00000555213 LCE3CQ5T5A8 94 aa3.72□□□□□ -1.81
SHMT2-218ENST00000555213 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
SHMT2-218ENST00000555213 SPRR5A0A1B0GTR4 108 aa3.67□□□□□ -1.82
SHMT2-218ENST00000555213 AHNAK2Q8IVF2 5795 aa3.63□□□□□ -1.83
SHMT2-218ENST00000555213 HMCN1Q96RW7 5635 aa3.61□□□□□ -1.83
SHMT2-218ENST00000555213 A0A0A0MQY5 61 aa3.61□□□□□ -1.83
SHMT2-218ENST00000555213 KRTAP5-10Q6L8G5 202 aa3.61□□□□□ -1.83
SHMT2-218ENST00000555213 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
SHMT2-218ENST00000555213 MT4P47944 62 aa3.54□□□□□ -1.84
SHMT2-218ENST00000555213 KRTAP5-7Q6L8G8 165 aa3.52□□□□□ -1.85
SHMT2-218ENST00000555213 KRTAP5-4Q6L8H1 288 aa3.48□□□□□ -1.85
SHMT2-218ENST00000555213 KRTAP5-5Q701N2 237 aaPredicted RBP3.46□□□□□ -1.86
SHMT2-218ENST00000555213 KRTAP5-3Q6L8H2 238 aa3.41□□□□□ -1.86
SHMT2-218ENST00000555213 KRTAP12-4P60329 112 aa3.37□□□□□ -1.87
SHMT2-218ENST00000555213 MT1AP04731 61 aa3.33□□□□□ -1.88
SHMT2-218ENST00000555213 MT3P25713 68 aa3.32□□□□□ -1.88
SHMT2-218ENST00000555213 LUZP6Q538Z0 58 aa3.32□□□□□ -1.88
SHMT2-218ENST00000555213 KRTAP20-2Q3LI61 65 aa3.28□□□□□ -1.88
SHMT2-218ENST00000555213 NDUFAF8A1L188 74 aa3.27□□□□□ -1.89
SHMT2-218ENST00000555213 KRTAP6-1Q3LI64 71 aa3.26□□□□□ -1.89
SHMT2-218ENST00000555213 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
SHMT2-218ENST00000555213 AHNAKQ09666 5890 aaKnown RBP3.24□□□□□ -1.89
SHMT2-218ENST00000555213 MUC5ACP98088 5654 aa3.11□□□□□ -1.91
SHMT2-218ENST00000555213 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
SHMT2-218ENST00000555213 KRTAP6-2Q3LI66 62 aa3.08□□□□□ -1.92
SHMT2-218ENST00000555213 MUC5BQ9HC84 5762 aaPredicted RBP3.06□□□□□ -1.92
SHMT2-218ENST00000555213 KRTAP5-8O75690 187 aa2.97□□□□□ -1.93
SHMT2-218ENST00000555213 LCE1EQ5T753 118 aa2.84□□□□□ -1.95
SHMT2-218ENST00000555213 OBSCNQ5VST9 7968 aa2.79□□□□□ -1.96
SHMT2-218ENST00000555213 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
SHMT2-218ENST00000555213 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
SHMT2-218ENST00000555213 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
SHMT2-218ENST00000555213 INE1O15225 51 aa2.67□□□□□ -1.98
SHMT2-218ENST00000555213 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
SHMT2-218ENST00000555213 KRTAP5-11Q6L8G4 156 aa2.65□□□□□ -1.99
SHMT2-218ENST00000555213 LCE1BQ5T7P3 118 aa2.55□□□□□ -2
SHMT2-218ENST00000555213 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.55□□□□□ -2
SHMT2-218ENST00000555213 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
SHMT2-218ENST00000555213 PRM1P04553 51 aa2.29□□□□□ -2.04
SHMT2-218ENST00000555213 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
SHMT2-218ENST00000555213 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
SHMT2-218ENST00000555213 KRTAP4-4Q9BYR3 166 aa2.09□□□□□ -2.07
SHMT2-218ENST00000555213 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
SHMT2-218ENST00000555213 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
SHMT2-218ENST00000555213 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 63.7 ms