RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 C10orf95Q9H7T3 257 aa4.21□□□□□ -1.74
SHMT2-215ENST00000554656 LCE3BQ5TA77 95 aa4.18□□□□□ -1.74
SHMT2-215ENST00000554656 KRTAP25-1Q3LHN0 102 aa4.17□□□□□ -1.74
SHMT2-215ENST00000554656 SVIPQ8NHG7 77 aa4.17□□□□□ -1.74
SHMT2-215ENST00000554656 TNP1P09430 55 aa4.12□□□□□ -1.75
SHMT2-215ENST00000554656 PRAC1Q96KF2 57 aa4.08□□□□□ -1.76
SHMT2-215ENST00000554656 KRTAP23-1A1A580 65 aa4.07□□□□□ -1.76
SHMT2-215ENST00000554656 PP632Q6XCG6 107 aa4.04□□□□□ -1.76
SHMT2-215ENST00000554656 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
SHMT2-215ENST00000554656 LCE5AQ5TCM9 118 aa3.99□□□□□ -1.77
SHMT2-215ENST00000554656 MT1EP04732 61 aa3.96□□□□□ -1.78
SHMT2-215ENST00000554656 KRTAP4-9Q9BYQ8 210 aa3.96□□□□□ -1.78
SHMT2-215ENST00000554656 DSTQ03001 7570 aaKnown RBP3.96□□□□□ -1.78
SHMT2-215ENST00000554656 KRTAP19-3Q7Z4W3 81 aa3.94□□□□□ -1.78
SHMT2-215ENST00000554656 LCE3AQ5TA76 89 aa3.9□□□□□ -1.79
SHMT2-215ENST00000554656 LOC100996750A0A140TA64 210 aa3.87□□□□□ -1.79
SHMT2-215ENST00000554656 KRTAP4-6Q9BYQ5 205 aa3.87□□□□□ -1.79
SHMT2-215ENST00000554656 LCE1DQ5T752 114 aa3.86□□□□□ -1.79
SHMT2-215ENST00000554656 KRTAP19-5Q3LI72 72 aa3.83□□□□□ -1.8
SHMT2-215ENST00000554656 MT1GP13640 62 aa3.81□□□□□ -1.8
SHMT2-215ENST00000554656 MT1MQ8N339 61 aa3.78□□□□□ -1.8
SHMT2-215ENST00000554656 MT4P47944 62 aa3.77□□□□□ -1.81
SHMT2-215ENST00000554656 KRTAP12-3P60328 96 aa3.77□□□□□ -1.81
SHMT2-215ENST00000554656 LCE4AQ5TA78 99 aa3.76□□□□□ -1.81
SHMT2-215ENST00000554656 MT1LQ93083 61 aa3.76□□□□□ -1.81
SHMT2-215ENST00000554656 HMCN1Q96RW7 5635 aa3.76□□□□□ -1.81
SHMT2-215ENST00000554656 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
SHMT2-215ENST00000554656 KRTAP15-1Q3LI76 137 aa3.71□□□□□ -1.82
SHMT2-215ENST00000554656 KRTAP5-4Q6L8H1 288 aa3.71□□□□□ -1.82
SHMT2-215ENST00000554656 KRTAP19-4Q3LI73 84 aa3.69□□□□□ -1.82
SHMT2-215ENST00000554656 AHNAK2Q8IVF2 5795 aa3.69□□□□□ -1.82
SHMT2-215ENST00000554656 KRTAP5-10Q6L8G5 202 aa3.68□□□□□ -1.82
SHMT2-215ENST00000554656 KRTAP5-7Q6L8G8 165 aa3.61□□□□□ -1.83
SHMT2-215ENST00000554656 KRTAP4-7Q9BYR0 210 aa3.59□□□□□ -1.83
SHMT2-215ENST00000554656 SPRR5A0A1B0GTR4 108 aa3.58□□□□□ -1.84
SHMT2-215ENST00000554656 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
SHMT2-215ENST00000554656 LCE3CQ5T5A8 94 aa3.53□□□□□ -1.84
SHMT2-215ENST00000554656 KRTAP20-2Q3LI61 65 aa3.51□□□□□ -1.85
SHMT2-215ENST00000554656 KRTAP5-5Q701N2 237 aaPredicted RBP3.5□□□□□ -1.85
SHMT2-215ENST00000554656 LUZP6Q538Z0 58 aa3.41□□□□□ -1.86
SHMT2-215ENST00000554656 KRTAP12-4P60329 112 aa3.38□□□□□ -1.87
SHMT2-215ENST00000554656 SYNE1Q8NF91 8797 aaKnown RBP3.31□□□□□ -1.88
SHMT2-215ENST00000554656 KRTAP9-6A8MVA2 160 aa3.29□□□□□ -1.88
SHMT2-215ENST00000554656 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
SHMT2-215ENST00000554656 AHNAKQ09666 5890 aaKnown RBP3.23□□□□□ -1.89
SHMT2-215ENST00000554656 KRTAP5-2Q701N4 177 aa3.23□□□□□ -1.89
SHMT2-215ENST00000554656 KRTAP4-11Q9BYQ6 195 aa3.23□□□□□ -1.89
SHMT2-215ENST00000554656 KRTAP6-1Q3LI64 71 aa3.2□□□□□ -1.9
SHMT2-215ENST00000554656 MT1AP04731 61 aa3.18□□□□□ -1.9
SHMT2-215ENST00000554656 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
SHMT2-215ENST00000554656 KRTAP9-4Q9BYQ2 154 aa3.16□□□□□ -1.9
SHMT2-215ENST00000554656 MUC5ACP98088 5654 aa3.15□□□□□ -1.91
SHMT2-215ENST00000554656 KRTAP5-8O75690 187 aa3.14□□□□□ -1.91
SHMT2-215ENST00000554656 MUC5BQ9HC84 5762 aaPredicted RBP3.1□□□□□ -1.91
SHMT2-215ENST00000554656 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
SHMT2-215ENST00000554656 KRTAP4-12Q9BQ66 201 aa3.07□□□□□ -1.92
SHMT2-215ENST00000554656 OBSCNQ5VST9 7968 aa3.02□□□□□ -1.93
SHMT2-215ENST00000554656 KRTAP4-2Q9BYR5 136 aa2.99□□□□□ -1.93
SHMT2-215ENST00000554656 A0A0A0MQY5 61 aa2.93□□□□□ -1.94
SHMT2-215ENST00000554656 KRTAP5-1Q6L8H4 278 aa2.93□□□□□ -1.94
SHMT2-215ENST00000554656 MT3P25713 68 aa2.88□□□□□ -1.95
SHMT2-215ENST00000554656 H3BS24 57 aa2.8□□□□□ -1.96
SHMT2-215ENST00000554656 INE1O15225 51 aa2.78□□□□□ -1.96
SHMT2-215ENST00000554656 LCE1EQ5T753 118 aa2.69□□□□□ -1.98
SHMT2-215ENST00000554656 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
SHMT2-215ENST00000554656 LCE3EQ5T5B0 92 aa2.58□□□□□ -2
SHMT2-215ENST00000554656 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
SHMT2-215ENST00000554656 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
SHMT2-215ENST00000554656 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
SHMT2-215ENST00000554656 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
SHMT2-215ENST00000554656 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
SHMT2-215ENST00000554656 PRM1P04553 51 aa2.2□□□□□ -2.06
SHMT2-215ENST00000554656 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
SHMT2-215ENST00000554656 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
SHMT2-215ENST00000554656 KRTAP4-4Q9BYR3 166 aa1.97□□□□□ -2.09
SHMT2-215ENST00000554656 MUC19Q7Z5P9 8384 aa1.87□□□□□ -2.11
SHMT2-215ENST00000554656 KRTAP21-1Q3LI58 79 aa1.62□□□□□ -2.15
SHMT2-215ENST00000554656 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 305.4 ms