RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 KRTAP4-1Q9BYQ7 146 aa1.38□□□□□ -2.19
PRPF39-206ENST00000554429 PLAC4Q8WY50 150 aa1.38□□□□□ -2.19
PRPF39-206ENST00000554429 MACF1Q9UPN3 7388 aaKnown RBP1.38□□□□□ -2.19
PRPF39-206ENST00000554429 INE1O15225 51 aa1.37□□□□□ -2.19
PRPF39-206ENST00000554429 MT1HP80294 61 aa1.37□□□□□ -2.19
PRPF39-206ENST00000554429 C10orf95Q9H7T3 257 aa1.37□□□□□ -2.19
PRPF39-206ENST00000554429 MRPL34Q9BQ48 92 aaKnown RBP1.35□□□□□ -2.19
PRPF39-206ENST00000554429 MUC5ACP98088 5654 aa1.35□□□□□ -2.19
PRPF39-206ENST00000554429 MT3P25713 68 aa1.35□□□□□ -2.19
PRPF39-206ENST00000554429 C9orf92A6NGG3 77 aa1.35□□□□□ -2.19
PRPF39-206ENST00000554429 FLGP20930 4061 aaPredicted RBP1.34□□□□□ -2.19
PRPF39-206ENST00000554429 SPRR1BP22528 89 aa1.34□□□□□ -2.19
PRPF39-206ENST00000554429 H0YAA0 97 aa1.34□□□□□ -2.2
PRPF39-206ENST00000554429 A0A0D9SG42 100 aa1.32□□□□□ -2.2
PRPF39-206ENST00000554429 OBSCNQ5VST9 7968 aa1.32□□□□□ -2.2
PRPF39-206ENST00000554429 RPL37P61927 97 aaKnown RBP1.31□□□□□ -2.2
PRPF39-206ENST00000554429 TP53AIP1Q9HCN2 124 aa1.31□□□□□ -2.2
PRPF39-206ENST00000554429 KRTAP10-12P60413 245 aa1.31□□□□□ -2.2
PRPF39-206ENST00000554429 MDN1Q9NU22 5596 aa1.3□□□□□ -2.2
PRPF39-206ENST00000554429 PP632Q6XCG6 107 aa1.29□□□□□ -2.2
PRPF39-206ENST00000554429 KRTAP12-2P59991 146 aa1.28□□□□□ -2.2
PRPF39-206ENST00000554429 FSIP2Q5CZC0 6907 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 KRTAP19-6Q3LI70 58 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 USH2AO75445 5202 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 KMT2DO14686 5537 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 MT2AP02795 61 aa1.26□□□□□ -2.21
PRPF39-206ENST00000554429 M0R2T5 61 aa1.25□□□□□ -2.21
PRPF39-206ENST00000554429 H1FX-AS1Q4G0G2 97 aa1.25□□□□□ -2.21
PRPF39-206ENST00000554429 FCGBPQ9Y6R7 5405 aaPredicted RBP1.25□□□□□ -2.21
PRPF39-206ENST00000554429 COX6B2Q6YFQ2 88 aa1.24□□□□□ -2.21
PRPF39-206ENST00000554429 MT1FP04733 61 aa1.24□□□□□ -2.21
PRPF39-206ENST00000554429 KRTAP13-4Q3LI77 160 aa1.24□□□□□ -2.21
PRPF39-206ENST00000554429 KRTAP5-5Q701N2 237 aaPredicted RBP1.22□□□□□ -2.21
PRPF39-206ENST00000554429 LCE1FQ5T754 118 aa1.2□□□□□ -2.22
PRPF39-206ENST00000554429 LCE3AQ5TA76 89 aa1.19□□□□□ -2.22
PRPF39-206ENST00000554429 KRTAP10-10P60014 251 aa1.19□□□□□ -2.22
PRPF39-206ENST00000554429 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
PRPF39-206ENST00000554429 LCE1BQ5T7P3 118 aa1.18□□□□□ -2.22
PRPF39-206ENST00000554429 KRTAP12-1P59990 96 aa1.17□□□□□ -2.22
PRPF39-206ENST00000554429 S4R3F8 94 aa1.17□□□□□ -2.22
PRPF39-206ENST00000554429 KRTAP19-8Q3LI54 63 aa1.16□□□□□ -2.22
PRPF39-206ENST00000554429 M0QZ58 72 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 MT1BP07438 61 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 LCE3CQ5T5A8 94 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 SPRR2GQ9BYE4 73 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 MUC12Q9UKN1 5478 aa1.08□□□□□ -2.24
PRPF39-206ENST00000554429 LCE3EQ5T5B0 92 aa1.06□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2EP22531 72 aa1.05□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2BP35325 72 aa1.05□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2AP35326 72 aa1.05□□□□□ -2.24
PRPF39-206ENST00000554429 DSTQ03001 7570 aaKnown RBP1.05□□□□□ -2.24
PRPF39-206ENST00000554429 MT1XP80297 61 aa1.04□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2FQ96RM1 72 aa1.03□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2DP22532 72 aa1.03□□□□□ -2.24
PRPF39-206ENST00000554429 KRTAP8-1Q8IUC2 63 aa1.02□□□□□ -2.25
PRPF39-206ENST00000554429 KRTAP12-4P60329 112 aa1.01□□□□□ -2.25
PRPF39-206ENST00000554429 SYNE1Q8NF91 8797 aaKnown RBP1□□□□□ -2.25
PRPF39-206ENST00000554429 LCE3DQ9BYE3 92 aa0.99□□□□□ -2.25
PRPF39-206ENST00000554429 TNP1P09430 55 aa0.99□□□□□ -2.25
PRPF39-206ENST00000554429 KRTAP19-3Q7Z4W3 81 aa0.94□□□□□ -2.26
PRPF39-206ENST00000554429 KRTAP19-7Q3SYF9 63 aa0.93□□□□□ -2.26
PRPF39-206ENST00000554429 MT1EP04732 61 aa0.93□□□□□ -2.26
PRPF39-206ENST00000554429 MT1GP13640 62 aa0.92□□□□□ -2.26
PRPF39-206ENST00000554429 KRTAP12-3P60328 96 aa0.9□□□□□ -2.27
PRPF39-206ENST00000554429 MT1MQ8N339 61 aa0.89□□□□□ -2.27
PRPF39-206ENST00000554429 KRTAP19-5Q3LI72 72 aa0.87□□□□□ -2.27
PRPF39-206ENST00000554429 MT1LQ93083 61 aa0.87□□□□□ -2.27
PRPF39-206ENST00000554429 MT4P47944 62 aa0.86□□□□□ -2.27
PRPF39-206ENST00000554429 KRTAP20-2Q3LI61 65 aa0.86□□□□□ -2.27
PRPF39-206ENST00000554429 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
PRPF39-206ENST00000554429 MUC19Q7Z5P9 8384 aa0.82□□□□□ -2.28
PRPF39-206ENST00000554429 KRTAP21-2Q3LI59 83 aa0.82□□□□□ -2.28
PRPF39-206ENST00000554429 PHGR1C9JFL3 82 aa0.81□□□□□ -2.28
PRPF39-206ENST00000554429 PRM1P04553 51 aa0.79□□□□□ -2.28
PRPF39-206ENST00000554429 MT1AP04731 61 aa0.76□□□□□ -2.29
PRPF39-206ENST00000554429 KRTAP6-1Q3LI64 71 aa0.72□□□□□ -2.29
PRPF39-206ENST00000554429 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
PRPF39-206ENST00000554429 MUC16Q8WXI7 14507 aa0.58□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 440.3 ms