RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 LINC01558Q9Y6Z2 57 aa4.34□□□□□ -1.71
CCDC88C-208ENST00000554165 TMEM258P61165 79 aa4.33□□□□□ -1.72
CCDC88C-208ENST00000554165 KRTAP2-2Q9BYT5 123 aa4.32□□□□□ -1.72
CCDC88C-208ENST00000554165 KRTAP2-1Q9BYU5 128 aa4.32□□□□□ -1.72
CCDC88C-208ENST00000554165 MT1EP04732 61 aa4.31□□□□□ -1.72
CCDC88C-208ENST00000554165 PRR15LQ9BU68 103 aa4.3□□□□□ -1.72
CCDC88C-208ENST00000554165 C10orf95Q9H7T3 257 aa4.29□□□□□ -1.72
CCDC88C-208ENST00000554165 KRTAP19-5Q3LI72 72 aa4.28□□□□□ -1.72
CCDC88C-208ENST00000554165 KRTAP15-1Q3LI76 137 aa4.25□□□□□ -1.73
CCDC88C-208ENST00000554165 KRTAP19-3Q7Z4W3 81 aa4.24□□□□□ -1.73
CCDC88C-208ENST00000554165 DSTQ03001 7570 aaKnown RBP4.21□□□□□ -1.74
CCDC88C-208ENST00000554165 LCE3AQ5TA76 89 aa4.21□□□□□ -1.74
CCDC88C-208ENST00000554165 UQCR11O14957 56 aa4.19□□□□□ -1.74
CCDC88C-208ENST00000554165 TNP1P09430 55 aa4.18□□□□□ -1.74
CCDC88C-208ENST00000554165 MT1LQ93083 61 aa4.14□□□□□ -1.75
CCDC88C-208ENST00000554165 PSPHP1O15172 72 aa4.13□□□□□ -1.75
CCDC88C-208ENST00000554165 MT1GP13640 62 aa4.13□□□□□ -1.75
CCDC88C-208ENST00000554165 MIR22HGQ0VDD5 57 aa4.13□□□□□ -1.75
CCDC88C-208ENST00000554165 MT1MQ8N339 61 aa4.1□□□□□ -1.75
CCDC88C-208ENST00000554165 KRTAP4-3Q9BYR4 195 aa4.08□□□□□ -1.76
CCDC88C-208ENST00000554165 Q1T7F1 81 aa4.07□□□□□ -1.76
CCDC88C-208ENST00000554165 PRAC1Q96KF2 57 aa4.07□□□□□ -1.76
CCDC88C-208ENST00000554165 PP632Q6XCG6 107 aa4.06□□□□□ -1.76
CCDC88C-208ENST00000554165 V9GYY9 64 aa4.04□□□□□ -1.76
CCDC88C-208ENST00000554165 KRTAP12-3P60328 96 aa4.02□□□□□ -1.77
CCDC88C-208ENST00000554165 K7ERS5 55 aa3.97□□□□□ -1.77
CCDC88C-208ENST00000554165 KRTAP25-1Q3LHN0 102 aa3.97□□□□□ -1.77
CCDC88C-208ENST00000554165 A6NED7 52 aa3.95□□□□□ -1.78
CCDC88C-208ENST00000554165 GPR98Q8WXG9 6306 aa3.92□□□□□ -1.78
CCDC88C-208ENST00000554165 HMCN1Q96RW7 5635 aa3.9□□□□□ -1.78
CCDC88C-208ENST00000554165 MT4P47944 62 aa3.9□□□□□ -1.79
CCDC88C-208ENST00000554165 RPS28P62857 69 aaKnown RBP3.9□□□□□ -1.79
CCDC88C-208ENST00000554165 KRTAP5-4Q6L8H1 288 aa3.85□□□□□ -1.79
CCDC88C-208ENST00000554165 CDC42SE1Q9NRR8 79 aa3.8□□□□□ -1.8
CCDC88C-208ENST00000554165 AHNAK2Q8IVF2 5795 aa3.78□□□□□ -1.8
CCDC88C-208ENST00000554165 ROMO1P60602 79 aa3.77□□□□□ -1.81
CCDC88C-208ENST00000554165 KRTAP5-5Q701N2 237 aaPredicted RBP3.75□□□□□ -1.81
CCDC88C-208ENST00000554165 LCE3CQ5T5A8 94 aa3.71□□□□□ -1.82
CCDC88C-208ENST00000554165 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
CCDC88C-208ENST00000554165 KRTAP20-2Q3LI61 65 aa3.64□□□□□ -1.83
CCDC88C-208ENST00000554165 SYNE1Q8NF91 8797 aaKnown RBP3.63□□□□□ -1.83
CCDC88C-208ENST00000554165 SPRR5A0A1B0GTR4 108 aa3.59□□□□□ -1.83
CCDC88C-208ENST00000554165 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
CCDC88C-208ENST00000554165 KRTAP12-4P60329 112 aa3.59□□□□□ -1.83
CCDC88C-208ENST00000554165 KRTAP5-11Q6L8G4 156 aa3.59□□□□□ -1.83
CCDC88C-208ENST00000554165 KRTAP5-10Q6L8G5 202 aa3.59□□□□□ -1.83
CCDC88C-208ENST00000554165 KRTAP9-6A8MVA2 160 aa3.57□□□□□ -1.84
CCDC88C-208ENST00000554165 KRTAP6-1Q3LI64 71 aa3.52□□□□□ -1.85
CCDC88C-208ENST00000554165 MT1AP04731 61 aa3.5□□□□□ -1.85
CCDC88C-208ENST00000554165 BRK1Q8WUW1 75 aa3.45□□□□□ -1.86
CCDC88C-208ENST00000554165 KRTAP5-7Q6L8G8 165 aa3.42□□□□□ -1.86
CCDC88C-208ENST00000554165 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
CCDC88C-208ENST00000554165 LCE1EQ5T753 118 aa3.38□□□□□ -1.87
CCDC88C-208ENST00000554165 KRTAP6-2Q3LI66 62 aa3.34□□□□□ -1.87
CCDC88C-208ENST00000554165 MT3P25713 68 aa3.27□□□□□ -1.89
CCDC88C-208ENST00000554165 OBSCNQ5VST9 7968 aa3.25□□□□□ -1.89
CCDC88C-208ENST00000554165 PMAIP1Q13794 54 aa3.24□□□□□ -1.89
CCDC88C-208ENST00000554165 LCE1FQ5T754 118 aa3.21□□□□□ -1.9
CCDC88C-208ENST00000554165 KRTAP5-8O75690 187 aa3.2□□□□□ -1.9
CCDC88C-208ENST00000554165 KRTAP5-1Q6L8H4 278 aa3.17□□□□□ -1.9
CCDC88C-208ENST00000554165 AHNAKQ09666 5890 aaKnown RBP3.13□□□□□ -1.91
CCDC88C-208ENST00000554165 MUC5BQ9HC84 5762 aaPredicted RBP3.09□□□□□ -1.91
CCDC88C-208ENST00000554165 PRO0628Q9UI54 55 aa3.08□□□□□ -1.92
CCDC88C-208ENST00000554165 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
CCDC88C-208ENST00000554165 MUC5ACP98088 5654 aa3.07□□□□□ -1.92
CCDC88C-208ENST00000554165 LUZP6Q538Z0 58 aa3□□□□□ -1.93
CCDC88C-208ENST00000554165 KTN1-AS1Q86SY8 53 aa2.86□□□□□ -1.95
CCDC88C-208ENST00000554165 LCE1BQ5T7P3 118 aa2.78□□□□□ -1.96
CCDC88C-208ENST00000554165 LCE3EQ5T5B0 92 aa2.73□□□□□ -1.97
CCDC88C-208ENST00000554165 LCE1CQ5T751 118 aa2.69□□□□□ -1.98
CCDC88C-208ENST00000554165 LCE3DQ9BYE3 92 aa2.68□□□□□ -1.98
CCDC88C-208ENST00000554165 KRTAP21-2Q3LI59 83 aa2.3□□□□□ -2.04
CCDC88C-208ENST00000554165 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
CCDC88C-208ENST00000554165 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
CCDC88C-208ENST00000554165 PRM1P04553 51 aa1.96□□□□□ -2.1
CCDC88C-208ENST00000554165 INE1O15225 51 aa1.81□□□□□ -2.12
CCDC88C-208ENST00000554165 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
CCDC88C-208ENST00000554165 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 8.7 ms