RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 V9GYY9 64 aa4.57□□□□□ -1.68
SRP54-203ENST00000553544 UQCR11O14957 56 aa4.53□□□□□ -1.68
SRP54-203ENST00000553544 KRTAP12-1P59990 96 aa4.51□□□□□ -1.69
SRP54-203ENST00000553544 KRTAP5-3Q6L8H2 238 aa4.49□□□□□ -1.69
SRP54-203ENST00000553544 A8MU10 97 aa4.46□□□□□ -1.7
SRP54-203ENST00000553544 PCP4P48539 62 aa4.43□□□□□ -1.7
SRP54-203ENST00000553544 Q1T7F1 81 aa4.43□□□□□ -1.7
SRP54-203ENST00000553544 KRTAP15-1Q3LI76 137 aa4.43□□□□□ -1.7
SRP54-203ENST00000553544 KRTAP19-3Q7Z4W3 81 aa4.43□□□□□ -1.7
SRP54-203ENST00000553544 K7ERS5 55 aa4.42□□□□□ -1.7
SRP54-203ENST00000553544 KRTAP19-7Q3SYF9 63 aa4.42□□□□□ -1.7
SRP54-203ENST00000553544 HMCN1Q96RW7 5635 aa4.41□□□□□ -1.7
SRP54-203ENST00000553544 MT4P47944 62 aa4.41□□□□□ -1.7
SRP54-203ENST00000553544 MIR22HGQ0VDD5 57 aa4.41□□□□□ -1.7
SRP54-203ENST00000553544 MT1EP04732 61 aa4.37□□□□□ -1.71
SRP54-203ENST00000553544 RPS28P62857 69 aaKnown RBP4.37□□□□□ -1.71
SRP54-203ENST00000553544 AHNAK2Q8IVF2 5795 aa4.36□□□□□ -1.71
SRP54-203ENST00000553544 PSPHP1O15172 72 aa4.36□□□□□ -1.71
SRP54-203ENST00000553544 TNP1P09430 55 aa4.36□□□□□ -1.71
SRP54-203ENST00000553544 KRTAP5-10Q6L8G5 202 aa4.36□□□□□ -1.71
SRP54-203ENST00000553544 MT1GP13640 62 aa4.31□□□□□ -1.72
SRP54-203ENST00000553544 A6NED7 52 aa4.3□□□□□ -1.72
SRP54-203ENST00000553544 PP632Q6XCG6 107 aa4.28□□□□□ -1.72
SRP54-203ENST00000553544 KRTAP19-5Q3LI72 72 aa4.27□□□□□ -1.73
SRP54-203ENST00000553544 C10orf95Q9H7T3 257 aa4.27□□□□□ -1.73
SRP54-203ENST00000553544 KRTAP5-7Q6L8G8 165 aa4.26□□□□□ -1.73
SRP54-203ENST00000553544 KRTAP5-4Q6L8H1 288 aa4.22□□□□□ -1.73
SRP54-203ENST00000553544 KRTAP25-1Q3LHN0 102 aa4.2□□□□□ -1.74
SRP54-203ENST00000553544 MT1MQ8N339 61 aa4.19□□□□□ -1.74
SRP54-203ENST00000553544 LCE3AQ5TA76 89 aa4.17□□□□□ -1.74
SRP54-203ENST00000553544 MT1LQ93083 61 aa4.17□□□□□ -1.74
SRP54-203ENST00000553544 CDC42SE1Q9NRR8 79 aa4.15□□□□□ -1.75
SRP54-203ENST00000553544 SPRR5A0A1B0GTR4 108 aa4.12□□□□□ -1.75
SRP54-203ENST00000553544 KRTAP4-3Q9BYR4 195 aa4.1□□□□□ -1.75
SRP54-203ENST00000553544 KRTAP12-3P60328 96 aa4.05□□□□□ -1.76
SRP54-203ENST00000553544 ROMO1P60602 79 aa4.04□□□□□ -1.76
SRP54-203ENST00000553544 KRTAP20-2Q3LI61 65 aa4.01□□□□□ -1.77
SRP54-203ENST00000553544 KRTAP12-4P60329 112 aa3.93□□□□□ -1.78
SRP54-203ENST00000553544 BRK1Q8WUW1 75 aa3.88□□□□□ -1.79
SRP54-203ENST00000553544 KRTAP5-5Q701N2 237 aaPredicted RBP3.87□□□□□ -1.79
SRP54-203ENST00000553544 SYNE1Q8NF91 8797 aaKnown RBP3.79□□□□□ -1.8
SRP54-203ENST00000553544 AHNAKQ09666 5890 aaKnown RBP3.73□□□□□ -1.81
SRP54-203ENST00000553544 LCE3CQ5T5A8 94 aa3.73□□□□□ -1.81
SRP54-203ENST00000553544 MUC5ACP98088 5654 aa3.68□□□□□ -1.82
SRP54-203ENST00000553544 MUC5BQ9HC84 5762 aaPredicted RBP3.67□□□□□ -1.82
SRP54-203ENST00000553544 PMAIP1Q13794 54 aa3.66□□□□□ -1.82
SRP54-203ENST00000553544 KRTAP5-8O75690 187 aa3.65□□□□□ -1.83
SRP54-203ENST00000553544 KRTAP5-2Q701N4 177 aa3.62□□□□□ -1.83
SRP54-203ENST00000553544 MT1AP04731 61 aa3.55□□□□□ -1.84
SRP54-203ENST00000553544 PRO0628Q9UI54 55 aa3.54□□□□□ -1.84
SRP54-203ENST00000553544 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.84
SRP54-203ENST00000553544 KRTAP9-6A8MVA2 160 aa3.52□□□□□ -1.85
SRP54-203ENST00000553544 OBSCNQ5VST9 7968 aa3.51□□□□□ -1.85
SRP54-203ENST00000553544 MT3P25713 68 aa3.49□□□□□ -1.85
SRP54-203ENST00000553544 KRTAP6-2Q3LI66 62 aa3.44□□□□□ -1.86
SRP54-203ENST00000553544 LCE1EQ5T753 118 aa3.38□□□□□ -1.87
SRP54-203ENST00000553544 KRTAP5-11Q6L8G4 156 aa3.38□□□□□ -1.87
SRP54-203ENST00000553544 PRAC1Q96KF2 57 aa3.38□□□□□ -1.87
SRP54-203ENST00000553544 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.37□□□□□ -1.87
SRP54-203ENST00000553544 KTN1-AS1Q86SY8 53 aa3.37□□□□□ -1.87
SRP54-203ENST00000553544 KRTAP5-1Q6L8H4 278 aa3.33□□□□□ -1.88
SRP54-203ENST00000553544 SVIPQ8NHG7 77 aa3.22□□□□□ -1.89
SRP54-203ENST00000553544 A0A0A0MQY5 61 aa3.2□□□□□ -1.9
SRP54-203ENST00000553544 LUZP6Q538Z0 58 aa3.03□□□□□ -1.92
SRP54-203ENST00000553544 LCE1FQ5T754 118 aa2.96□□□□□ -1.94
SRP54-203ENST00000553544 LCE1BQ5T7P3 118 aa2.93□□□□□ -1.94
SRP54-203ENST00000553544 LCE1CQ5T751 118 aa2.85□□□□□ -1.95
SRP54-203ENST00000553544 NDUFAF8A1L188 74 aa2.84□□□□□ -1.95
SRP54-203ENST00000553544 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
SRP54-203ENST00000553544 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
SRP54-203ENST00000553544 LCE3EQ5T5B0 92 aa2.62□□□□□ -1.99
SRP54-203ENST00000553544 PHGR1C9JFL3 82 aa2.57□□□□□ -2
SRP54-203ENST00000553544 KRTAP21-2Q3LI59 83 aa2.34□□□□□ -2.03
SRP54-203ENST00000553544 MUC19Q7Z5P9 8384 aa2.18□□□□□ -2.06
SRP54-203ENST00000553544 INE1O15225 51 aa2.12□□□□□ -2.07
SRP54-203ENST00000553544 PRM1P04553 51 aa2.04□□□□□ -2.08
SRP54-203ENST00000553544 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
SRP54-203ENST00000553544 MUC16Q8WXI7 14507 aa1.48□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 133.7 ms