RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PRO2289Q9P1D8 64 aa1.92□□□□□ -2.1
LIMA1-214ENST00000552783 FSIP2Q5CZC0 6907 aa1.91□□□□□ -2.1
LIMA1-214ENST00000552783 KRTAP8-1Q8IUC2 63 aa1.9□□□□□ -2.1
LIMA1-214ENST00000552783 KRTAP10-12P60413 245 aa1.9□□□□□ -2.11
LIMA1-214ENST00000552783 KRTAP10-5P60370 271 aa1.89□□□□□ -2.11
LIMA1-214ENST00000552783 MT1XP80297 61 aa1.89□□□□□ -2.11
LIMA1-214ENST00000552783 KRTAP12-3P60328 96 aa1.88□□□□□ -2.11
LIMA1-214ENST00000552783 KRTAP10-7P60409 375 aaPredicted RBP1.88□□□□□ -2.11
LIMA1-214ENST00000552783 MT1BP07438 61 aa1.87□□□□□ -2.11
LIMA1-214ENST00000552783 INE1O15225 51 aa1.85□□□□□ -2.11
LIMA1-214ENST00000552783 KRTAP19-8Q3LI54 63 aa1.84□□□□□ -2.12
LIMA1-214ENST00000552783 KRTAP5-4Q6L8H1 288 aa1.83□□□□□ -2.12
LIMA1-214ENST00000552783 KRTAP9-6A8MVA2 160 aa1.81□□□□□ -2.12
LIMA1-214ENST00000552783 KRTAP19-5Q3LI72 72 aa1.79□□□□□ -2.12
LIMA1-214ENST00000552783 LCE3CQ5T5A8 94 aa1.77□□□□□ -2.13
LIMA1-214ENST00000552783 CRCT1Q9UGL9 99 aa1.74□□□□□ -2.13
LIMA1-214ENST00000552783 KRTAP5-8O75690 187 aa1.73□□□□□ -2.13
LIMA1-214ENST00000552783 OBSCNQ5VST9 7968 aa1.72□□□□□ -2.13
LIMA1-214ENST00000552783 LCE1AQ5T7P2 110 aa1.71□□□□□ -2.14
LIMA1-214ENST00000552783 DSTQ03001 7570 aaKnown RBP1.71□□□□□ -2.14
LIMA1-214ENST00000552783 KRTAP2-3P0C7H8 128 aa1.7□□□□□ -2.14
LIMA1-214ENST00000552783 KRTAP2-4Q9BYR9 128 aa1.7□□□□□ -2.14
LIMA1-214ENST00000552783 KRTAP2-1Q9BYU5 128 aa1.7□□□□□ -2.14
LIMA1-214ENST00000552783 KRTAP5-2Q701N4 177 aa1.7□□□□□ -2.14
LIMA1-214ENST00000552783 KRTAP19-7Q3SYF9 63 aa1.68□□□□□ -2.14
LIMA1-214ENST00000552783 SSPOA2VEC9 5147 aa1.68□□□□□ -2.14
LIMA1-214ENST00000552783 SYNE1Q8NF91 8797 aaKnown RBP1.68□□□□□ -2.14
LIMA1-214ENST00000552783 FCGBPQ9Y6R7 5405 aaPredicted RBP1.67□□□□□ -2.14
LIMA1-214ENST00000552783 MUC12Q9UKN1 5478 aa1.67□□□□□ -2.14
LIMA1-214ENST00000552783 KRTAP19-6Q3LI70 58 aa1.65□□□□□ -2.15
LIMA1-214ENST00000552783 MT1LQ93083 61 aa1.62□□□□□ -2.15
LIMA1-214ENST00000552783 KRTAP4-3Q9BYR4 195 aa1.62□□□□□ -2.15
LIMA1-214ENST00000552783 KRTAP4-4Q9BYR3 166 aa1.6□□□□□ -2.15
LIMA1-214ENST00000552783 MT1EP04732 61 aa1.6□□□□□ -2.15
LIMA1-214ENST00000552783 MT1GP13640 62 aa1.59□□□□□ -2.15
LIMA1-214ENST00000552783 SPRR2FQ96RM1 72 aa1.59□□□□□ -2.16
LIMA1-214ENST00000552783 MACF1Q9UPN3 7388 aaKnown RBP1.57□□□□□ -2.16
LIMA1-214ENST00000552783 KRTAP12-4P60329 112 aa1.56□□□□□ -2.16
LIMA1-214ENST00000552783 SYNE2Q8WXH0 6885 aaKnown RBP1.56□□□□□ -2.16
LIMA1-214ENST00000552783 KRTAP6-3Q3LI67 103 aa1.54□□□□□ -2.16
LIMA1-214ENST00000552783 KRTAP2-2Q9BYT5 123 aa1.54□□□□□ -2.16
LIMA1-214ENST00000552783 LCE1EQ5T753 118 aa1.53□□□□□ -2.17
LIMA1-214ENST00000552783 KRTAP5-1Q6L8H4 278 aa1.53□□□□□ -2.17
LIMA1-214ENST00000552783 LCE1FQ5T754 118 aa1.51□□□□□ -2.17
LIMA1-214ENST00000552783 KRTAP19-3Q7Z4W3 81 aa1.51□□□□□ -2.17
LIMA1-214ENST00000552783 MT3P25713 68 aa1.5□□□□□ -2.17
LIMA1-214ENST00000552783 MT1MQ8N339 61 aa1.5□□□□□ -2.17
LIMA1-214ENST00000552783 KRTAP5-11Q6L8G4 156 aa1.49□□□□□ -2.17
LIMA1-214ENST00000552783 MDN1Q9NU22 5596 aa1.46□□□□□ -2.18
LIMA1-214ENST00000552783 GPR98Q8WXG9 6306 aa1.46□□□□□ -2.18
LIMA1-214ENST00000552783 NEBP20929 6669 aa1.46□□□□□ -2.18
LIMA1-214ENST00000552783 SPRR2EP22531 72 aa1.42□□□□□ -2.18
LIMA1-214ENST00000552783 SPRR2BP35325 72 aa1.42□□□□□ -2.18
LIMA1-214ENST00000552783 SPRR2AP35326 72 aa1.42□□□□□ -2.18
LIMA1-214ENST00000552783 KRTAP5-5Q701N2 237 aaPredicted RBP1.42□□□□□ -2.18
LIMA1-214ENST00000552783 KRTAP6-1Q3LI64 71 aa1.42□□□□□ -2.18
LIMA1-214ENST00000552783 PRM1P04553 51 aa1.4□□□□□ -2.18
LIMA1-214ENST00000552783 KRTAP20-1Q3LI63 56 aa1.4□□□□□ -2.19
LIMA1-214ENST00000552783 LCE3DQ9BYE3 92 aa1.38□□□□□ -2.19
LIMA1-214ENST00000552783 MT1AP04731 61 aa1.36□□□□□ -2.19
LIMA1-214ENST00000552783 LCE3EQ5T5B0 92 aa1.36□□□□□ -2.19
LIMA1-214ENST00000552783 SPRR2DP22532 72 aa1.35□□□□□ -2.19
LIMA1-214ENST00000552783 KRTAP6-2Q3LI66 62 aa1.33□□□□□ -2.2
LIMA1-214ENST00000552783 MUC19Q7Z5P9 8384 aa1.31□□□□□ -2.2
LIMA1-214ENST00000552783 AHNAKQ09666 5890 aaKnown RBP1.28□□□□□ -2.21
LIMA1-214ENST00000552783 AHNAK2Q8IVF2 5795 aa1.26□□□□□ -2.21
LIMA1-214ENST00000552783 MT4P47944 62 aa1.26□□□□□ -2.21
LIMA1-214ENST00000552783 KRTAP5-7Q6L8G8 165 aa1.19□□□□□ -2.22
LIMA1-214ENST00000552783 LCE1BQ5T7P3 118 aa1.14□□□□□ -2.23
LIMA1-214ENST00000552783 KRTAP20-2Q3LI61 65 aa1.13□□□□□ -2.23
LIMA1-214ENST00000552783 MUC5ACP98088 5654 aa1.12□□□□□ -2.23
LIMA1-214ENST00000552783 KRTAP5-10Q6L8G5 202 aa1.1□□□□□ -2.23
LIMA1-214ENST00000552783 LCE1CQ5T751 118 aa1□□□□□ -2.25
LIMA1-214ENST00000552783 KRTAP21-2Q3LI59 83 aa0.9□□□□□ -2.27
LIMA1-214ENST00000552783 KRTAP21-1Q3LI58 79 aa0.87□□□□□ -2.27
LIMA1-214ENST00000552783 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
LIMA1-214ENST00000552783 PHGR1C9JFL3 82 aa0.66□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 82.5 ms