RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 KRTAP19-5Q3LI72 72 aa7.89□□□□□ -1.15
VPS29-206ENST00000549578 SPRR2EP22531 72 aa7.86□□□□□ -1.15
VPS29-206ENST00000549578 SPRR2BP35325 72 aa7.86□□□□□ -1.15
VPS29-206ENST00000549578 SPRR2AP35326 72 aa7.86□□□□□ -1.15
VPS29-206ENST00000549578 LCE1AQ5T7P2 110 aa7.83□□□□□ -1.16
VPS29-206ENST00000549578 MT1EP04732 61 aa7.83□□□□□ -1.16
VPS29-206ENST00000549578 KRTAP19-4Q3LI73 84 aa7.8□□□□□ -1.16
VPS29-206ENST00000549578 LCE4AQ5TA78 99 aa7.79□□□□□ -1.16
VPS29-206ENST00000549578 KRTAP4-2Q9BYR5 136 aa7.79□□□□□ -1.16
VPS29-206ENST00000549578 KRTAP23-1A1A580 65 aa7.7□□□□□ -1.18
VPS29-206ENST00000549578 KRTAP12-3P60328 96 aa7.68□□□□□ -1.18
VPS29-206ENST00000549578 KRTAP4-11Q9BYQ6 195 aa7.67□□□□□ -1.18
VPS29-206ENST00000549578 KRTAP19-3Q7Z4W3 81 aa7.63□□□□□ -1.19
VPS29-206ENST00000549578 SPRR2DP22532 72 aa7.58□□□□□ -1.2
VPS29-206ENST00000549578 PMAIP1Q13794 54 aa7.57□□□□□ -1.2
VPS29-206ENST00000549578 LCE5AQ5TCM9 118 aa7.57□□□□□ -1.2
VPS29-206ENST00000549578 MT1LQ93083 61 aa7.57□□□□□ -1.2
VPS29-206ENST00000549578 PP632Q6XCG6 107 aa7.57□□□□□ -1.2
VPS29-206ENST00000549578 PRO0628Q9UI54 55 aa7.51□□□□□ -1.21
VPS29-206ENST00000549578 MT1GP13640 62 aa7.5□□□□□ -1.21
VPS29-206ENST00000549578 KRTAP20-1Q3LI63 56 aa7.46□□□□□ -1.22
VPS29-206ENST00000549578 MT1MQ8N339 61 aa7.42□□□□□ -1.22
VPS29-206ENST00000549578 KRTAP2-3P0C7H8 128 aa7.4□□□□□ -1.22
VPS29-206ENST00000549578 KRTAP2-4Q9BYR9 128 aa7.4□□□□□ -1.22
VPS29-206ENST00000549578 KRTAP15-1Q3LI76 137 aa7.36□□□□□ -1.23
VPS29-206ENST00000549578 DSTQ03001 7570 aaKnown RBP7.28□□□□□ -1.24
VPS29-206ENST00000549578 KRTAP4-3Q9BYR4 195 aa7.27□□□□□ -1.25
VPS29-206ENST00000549578 PRAC1Q96KF2 57 aa7.21□□□□□ -1.26
VPS29-206ENST00000549578 KRTAP2-2Q9BYT5 123 aa7.21□□□□□ -1.26
VPS29-206ENST00000549578 KRTAP2-1Q9BYU5 128 aa7.21□□□□□ -1.26
VPS29-206ENST00000549578 LCE3CQ5T5A8 94 aa7.12□□□□□ -1.27
VPS29-206ENST00000549578 KRTAP5-3Q6L8H2 238 aa7.12□□□□□ -1.27
VPS29-206ENST00000549578 KTN1-AS1Q86SY8 53 aa7.05□□□□□ -1.28
VPS29-206ENST00000549578 SVIPQ8NHG7 77 aa7.03□□□□□ -1.28
VPS29-206ENST00000549578 KRTAP9-6A8MVA2 160 aa6.74□□□□□ -1.33
VPS29-206ENST00000549578 KRTAP5-5Q701N2 237 aaPredicted RBP6.73□□□□□ -1.33
VPS29-206ENST00000549578 KRTAP5-4Q6L8H1 288 aa6.71□□□□□ -1.34
VPS29-206ENST00000549578 MT4P47944 62 aa6.61□□□□□ -1.35
VPS29-206ENST00000549578 HMCN1Q96RW7 5635 aa6.5□□□□□ -1.37
VPS29-206ENST00000549578 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.37
VPS29-206ENST00000549578 MT1AP04731 61 aa6.44□□□□□ -1.38
VPS29-206ENST00000549578 SYNE1Q8NF91 8797 aaKnown RBP6.42□□□□□ -1.38
VPS29-206ENST00000549578 KRTAP12-4P60329 112 aa6.4□□□□□ -1.39
VPS29-206ENST00000549578 KRTAP6-1Q3LI64 71 aa6.4□□□□□ -1.39
VPS29-206ENST00000549578 KRTAP20-2Q3LI61 65 aa6.3□□□□□ -1.4
VPS29-206ENST00000549578 AHNAK2Q8IVF2 5795 aa6.04□□□□□ -1.44
VPS29-206ENST00000549578 KRTAP6-2Q3LI66 62 aa6□□□□□ -1.45
VPS29-206ENST00000549578 KRTAP5-2Q701N4 177 aa5.99□□□□□ -1.45
VPS29-206ENST00000549578 A0A0A0MQY5 61 aa5.98□□□□□ -1.45
VPS29-206ENST00000549578 GPR98Q8WXG9 6306 aa5.97□□□□□ -1.45
VPS29-206ENST00000549578 LUZP6Q538Z0 58 aa5.93□□□□□ -1.46
VPS29-206ENST00000549578 MT3P25713 68 aa5.85□□□□□ -1.47
VPS29-206ENST00000549578 KRTAP5-10Q6L8G5 202 aa5.81□□□□□ -1.48
VPS29-206ENST00000549578 OBSCNQ5VST9 7968 aa5.58□□□□□ -1.52
VPS29-206ENST00000549578 KRTAP5-7Q6L8G8 165 aa5.49□□□□□ -1.53
VPS29-206ENST00000549578 KRTAP5-8O75690 187 aa5.42□□□□□ -1.54
VPS29-206ENST00000549578 NDUFAF8A1L188 74 aa5.38□□□□□ -1.55
VPS29-206ENST00000549578 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.29□□□□□ -1.56
VPS29-206ENST00000549578 KRTAP5-1Q6L8H4 278 aa5.27□□□□□ -1.57
VPS29-206ENST00000549578 LCE3DQ9BYE3 92 aa5.24□□□□□ -1.57
VPS29-206ENST00000549578 LCE1EQ5T753 118 aa5.22□□□□□ -1.57
VPS29-206ENST00000549578 KRTAP5-11Q6L8G4 156 aa5.14□□□□□ -1.59
VPS29-206ENST00000549578 MUC5ACP98088 5654 aa5.13□□□□□ -1.59
VPS29-206ENST00000549578 LCE3EQ5T5B0 92 aa5.02□□□□□ -1.61
VPS29-206ENST00000549578 LCE1BQ5T7P3 118 aa4.93□□□□□ -1.62
VPS29-206ENST00000549578 MUC5BQ9HC84 5762 aaPredicted RBP4.88□□□□□ -1.63
VPS29-206ENST00000549578 LCE1CQ5T751 118 aa4.86□□□□□ -1.63
VPS29-206ENST00000549578 AHNAKQ09666 5890 aaKnown RBP4.78□□□□□ -1.64
VPS29-206ENST00000549578 KRTAP4-4Q9BYR3 166 aa4.4□□□□□ -1.71
VPS29-206ENST00000549578 INE1O15225 51 aa4.36□□□□□ -1.71
VPS29-206ENST00000549578 LCE1FQ5T754 118 aa4.28□□□□□ -1.72
VPS29-206ENST00000549578 KRTAP21-2Q3LI59 83 aa4.2□□□□□ -1.74
VPS29-206ENST00000549578 PRM1P04553 51 aa4.12□□□□□ -1.75
VPS29-206ENST00000549578 PHGR1C9JFL3 82 aa3.75□□□□□ -1.81
VPS29-206ENST00000549578 MUC19Q7Z5P9 8384 aa3.39□□□□□ -1.87
VPS29-206ENST00000549578 KRTAP21-1Q3LI58 79 aa2.52□□□□□ -2.01
VPS29-206ENST00000549578 MUC16Q8WXI7 14507 aa2.36□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 184.3 ms