RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 KRTAP19-5Q3LI72 72 aa2.26□□□□□ -2.05
LIMA1-204ENST00000549064 COA5Q86WW8 74 aa2.25□□□□□ -2.05
LIMA1-204ENST00000549064 TP53AIP1Q9HCN2 124 aa2.25□□□□□ -2.05
LIMA1-204ENST00000549064 ACYP1P07311 99 aa2.24□□□□□ -2.05
LIMA1-204ENST00000549064 KRTAP13-4Q3LI77 160 aa2.24□□□□□ -2.05
LIMA1-204ENST00000549064 MT1LQ93083 61 aa2.24□□□□□ -2.05
LIMA1-204ENST00000549064 A0A1W2PPM0 123 aa2.23□□□□□ -2.05
LIMA1-204ENST00000549064 KRTAP12-1P59990 96 aa2.23□□□□□ -2.05
LIMA1-204ENST00000549064 TRAV22A0A0B4J277 110 aa2.22□□□□□ -2.05
LIMA1-204ENST00000549064 LOC101927531A0A1B0GV80 90 aa2.22□□□□□ -2.05
LIMA1-204ENST00000549064 MT-ATP8P03928 68 aa2.22□□□□□ -2.05
LIMA1-204ENST00000549064 KRTAP5-1Q6L8H4 278 aa2.22□□□□□ -2.05
LIMA1-204ENST00000549064 MUC5BQ9HC84 5762 aaPredicted RBP2.21□□□□□ -2.06
LIMA1-204ENST00000549064 AHNAKQ09666 5890 aaKnown RBP2.2□□□□□ -2.06
LIMA1-204ENST00000549064 MUC5ACP98088 5654 aa2.19□□□□□ -2.06
LIMA1-204ENST00000549064 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
LIMA1-204ENST00000549064 RPS28P62857 69 aaKnown RBP2.18□□□□□ -2.06
LIMA1-204ENST00000549064 KRTAP5-5Q701N2 237 aaPredicted RBP2.18□□□□□ -2.06
LIMA1-204ENST00000549064 A0A0D9SG42 100 aa2.17□□□□□ -2.06
LIMA1-204ENST00000549064 KRTAP12-3P60328 96 aa2.16□□□□□ -2.06
LIMA1-204ENST00000549064 KRTAP12-4P60329 112 aa2.16□□□□□ -2.06
LIMA1-204ENST00000549064 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
LIMA1-204ENST00000549064 SPCS1Q9Y6A9 102 aa2.16□□□□□ -2.06
LIMA1-204ENST00000549064 SYNE1Q8NF91 8797 aaKnown RBP2.16□□□□□ -2.06
LIMA1-204ENST00000549064 UBL5Q9BZL1 73 aa2.15□□□□□ -2.07
LIMA1-204ENST00000549064 UQCR10Q9UDW1 63 aa2.15□□□□□ -2.07
LIMA1-204ENST00000549064 ROMO1P60602 79 aa2.14□□□□□ -2.07
LIMA1-204ENST00000549064 A0A1B0GV90 55 aa2.13□□□□□ -2.07
LIMA1-204ENST00000549064 H0Y9P7 68 aa2.12□□□□□ -2.07
LIMA1-204ENST00000549064 PYY3Q5JQD4 70 aa2.12□□□□□ -2.07
LIMA1-204ENST00000549064 OBSCNQ5VST9 7968 aa2.12□□□□□ -2.07
LIMA1-204ENST00000549064 ATOX1O00244 68 aa2.08□□□□□ -2.08
LIMA1-204ENST00000549064 SMIM6P0DI80 62 aa2.08□□□□□ -2.08
LIMA1-204ENST00000549064 K7ERU9 68 aa2.07□□□□□ -2.08
LIMA1-204ENST00000549064 UQCRQO14949 82 aa2.07□□□□□ -2.08
LIMA1-204ENST00000549064 C10orf95Q9H7T3 257 aa2.07□□□□□ -2.08
LIMA1-204ENST00000549064 M0R143 59 aa2.06□□□□□ -2.08
LIMA1-204ENST00000549064 LINC00208Q96KT6 92 aa2.06□□□□□ -2.08
LIMA1-204ENST00000549064 KRTAP5-2Q701N4 177 aa2.05□□□□□ -2.08
LIMA1-204ENST00000549064 DMAC1Q96GE9 116 aa2.04□□□□□ -2.08
LIMA1-204ENST00000549064 BRK1Q8WUW1 75 aa2.03□□□□□ -2.08
LIMA1-204ENST00000549064 CDC42SE1Q9NRR8 79 aa2.01□□□□□ -2.09
LIMA1-204ENST00000549064 J3QR89 54 aa1.99□□□□□ -2.09
LIMA1-204ENST00000549064 SNURFQ9Y675 71 aa1.99□□□□□ -2.09
LIMA1-204ENST00000549064 LCE1CQ5T751 118 aa1.98□□□□□ -2.09
LIMA1-204ENST00000549064 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
LIMA1-204ENST00000549064 F8W1H4 67 aa1.96□□□□□ -2.1
LIMA1-204ENST00000549064 MIR22HGQ0VDD5 57 aa1.93□□□□□ -2.1
LIMA1-204ENST00000549064 KRTAP6-1Q3LI64 71 aa1.93□□□□□ -2.1
LIMA1-204ENST00000549064 SPTSSBQ8NFR3 76 aa1.92□□□□□ -2.1
LIMA1-204ENST00000549064 COX7CP15954 63 aa1.91□□□□□ -2.1
LIMA1-204ENST00000549064 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
LIMA1-204ENST00000549064 INE1O15225 51 aa1.9□□□□□ -2.11
LIMA1-204ENST00000549064 MT1AP04731 61 aa1.89□□□□□ -2.11
LIMA1-204ENST00000549064 ACYP2P14621 99 aa1.89□□□□□ -2.11
LIMA1-204ENST00000549064 SPATA8Q6RVD6 105 aa1.88□□□□□ -2.11
LIMA1-204ENST00000549064 CHKB-CPT1BH3BT56 60 aa1.87□□□□□ -2.11
LIMA1-204ENST00000549064 TNP1P09430 55 aa1.87□□□□□ -2.11
LIMA1-204ENST00000549064 CCDC179H3BU77 68 aa1.86□□□□□ -2.11
LIMA1-204ENST00000549064 COL5A1-AS1Q5SY13 56 aa1.86□□□□□ -2.11
LIMA1-204ENST00000549064 ATP5EP2Q5VTU8 51 aa1.86□□□□□ -2.11
LIMA1-204ENST00000549064 GTF2H5Q6ZYL4 71 aa1.86□□□□□ -2.11
LIMA1-204ENST00000549064 ETDBQ3ZM63 59 aa1.85□□□□□ -2.11
LIMA1-204ENST00000549064 SERP1Q9Y6X1 66 aa1.82□□□□□ -2.12
LIMA1-204ENST00000549064 ATP5EP56381 51 aaPredicted RBP1.74□□□□□ -2.13
LIMA1-204ENST00000549064 LINC00643Q86TS7 51 aa1.74□□□□□ -2.13
LIMA1-204ENST00000549064 SERP2Q8N6R1 65 aa1.61□□□□□ -2.15
LIMA1-204ENST00000549064 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
LIMA1-204ENST00000549064 PHGR1C9JFL3 82 aa1.56□□□□□ -2.16
LIMA1-204ENST00000549064 H7BZZ5 65 aa1.56□□□□□ -2.16
LIMA1-204ENST00000549064 A0A1B0GU69 56 aa1.54□□□□□ -2.16
LIMA1-204ENST00000549064 PRR15LQ9BU68 103 aa1.44□□□□□ -2.18
LIMA1-204ENST00000549064 LINC01558Q9Y6Z2 57 aa1.44□□□□□ -2.18
LIMA1-204ENST00000549064 UQCR11O14957 56 aa1.42□□□□□ -2.18
LIMA1-204ENST00000549064 KRTAP21-2Q3LI59 83 aa1.39□□□□□ -2.19
LIMA1-204ENST00000549064 KRTAP21-1Q3LI58 79 aa1.16□□□□□ -2.22
LIMA1-204ENST00000549064 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
LIMA1-204ENST00000549064 PRM1P04553 51 aa0.59□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 47.9 ms