RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 DSTQ03001 7570 aaKnown RBP4.85□□□□□ -1.63
PTCH1-218ENST00000548945 KRTAP19-7Q3SYF9 63 aa4.84□□□□□ -1.63
PTCH1-218ENST00000548945 KRTAP19-3Q7Z4W3 81 aa4.83□□□□□ -1.64
PTCH1-218ENST00000548945 CAMK2N1Q7Z7J9 78 aa4.81□□□□□ -1.64
PTCH1-218ENST00000548945 KRTAP4-9Q9BYQ8 210 aa4.81□□□□□ -1.64
PTCH1-218ENST00000548945 MT1EP04732 61 aa4.8□□□□□ -1.64
PTCH1-218ENST00000548945 KRTAP4-12Q9BQ66 201 aa4.77□□□□□ -1.65
PTCH1-218ENST00000548945 PMAIP1Q13794 54 aa4.76□□□□□ -1.65
PTCH1-218ENST00000548945 KRTAP9-9Q9BYP9 154 aa4.76□□□□□ -1.65
PTCH1-218ENST00000548945 KRTAP9-4Q9BYQ2 154 aa4.76□□□□□ -1.65
PTCH1-218ENST00000548945 HMCN1Q96RW7 5635 aa4.71□□□□□ -1.66
PTCH1-218ENST00000548945 LCE1DQ5T752 114 aa4.71□□□□□ -1.66
PTCH1-218ENST00000548945 MT1GP13640 62 aa4.69□□□□□ -1.66
PTCH1-218ENST00000548945 ROMO1P60602 79 aa4.69□□□□□ -1.66
PTCH1-218ENST00000548945 LCE4AQ5TA78 99 aa4.67□□□□□ -1.66
PTCH1-218ENST00000548945 PP632Q6XCG6 107 aa4.67□□□□□ -1.66
PTCH1-218ENST00000548945 KRTAP4-7Q9BYR0 210 aa4.66□□□□□ -1.66
PTCH1-218ENST00000548945 C10orf95Q9H7T3 257 aa4.65□□□□□ -1.67
PTCH1-218ENST00000548945 KRTAP19-5Q3LI72 72 aa4.63□□□□□ -1.67
PTCH1-218ENST00000548945 AHNAK2Q8IVF2 5795 aa4.6□□□□□ -1.67
PTCH1-218ENST00000548945 MT4P47944 62 aa4.6□□□□□ -1.67
PTCH1-218ENST00000548945 MT1MQ8N339 61 aa4.59□□□□□ -1.67
PTCH1-218ENST00000548945 TNP1P09430 55 aa4.57□□□□□ -1.68
PTCH1-218ENST00000548945 KRTAP25-1Q3LHN0 102 aa4.57□□□□□ -1.68
PTCH1-218ENST00000548945 KTN1-AS1Q86SY8 53 aa4.55□□□□□ -1.68
PTCH1-218ENST00000548945 MT1LQ93083 61 aa4.55□□□□□ -1.68
PTCH1-218ENST00000548945 KRTAP5-4Q6L8H1 288 aa4.54□□□□□ -1.68
PTCH1-218ENST00000548945 KRTAP5-10Q6L8G5 202 aa4.51□□□□□ -1.69
PTCH1-218ENST00000548945 SVIPQ8NHG7 77 aa4.47□□□□□ -1.69
PTCH1-218ENST00000548945 KRTAP4-3Q9BYR4 195 aa4.45□□□□□ -1.7
PTCH1-218ENST00000548945 PRAC1Q96KF2 57 aa4.44□□□□□ -1.7
PTCH1-218ENST00000548945 KRTAP4-2Q9BYR5 136 aa4.44□□□□□ -1.7
PTCH1-218ENST00000548945 KRTAP23-1A1A580 65 aa4.42□□□□□ -1.7
PTCH1-218ENST00000548945 LCE3AQ5TA76 89 aa4.41□□□□□ -1.7
PTCH1-218ENST00000548945 KRTAP5-7Q6L8G8 165 aa4.38□□□□□ -1.71
PTCH1-218ENST00000548945 KRTAP5-3Q6L8H2 238 aa4.34□□□□□ -1.71
PTCH1-218ENST00000548945 KRTAP20-2Q3LI61 65 aa4.28□□□□□ -1.72
PTCH1-218ENST00000548945 SPRR5A0A1B0GTR4 108 aa4.27□□□□□ -1.73
PTCH1-218ENST00000548945 KRTAP12-3P60328 96 aa4.26□□□□□ -1.73
PTCH1-218ENST00000548945 KRTAP4-11Q9BYQ6 195 aa4.26□□□□□ -1.73
PTCH1-218ENST00000548945 KRTAP5-5Q701N2 237 aaPredicted RBP4.25□□□□□ -1.73
PTCH1-218ENST00000548945 KRTAP12-4P60329 112 aa4.21□□□□□ -1.74
PTCH1-218ENST00000548945 KRTAP19-4Q3LI73 84 aa4.09□□□□□ -1.75
PTCH1-218ENST00000548945 KRTAP15-1Q3LI76 137 aa4.09□□□□□ -1.75
PTCH1-218ENST00000548945 SYNE1Q8NF91 8797 aaKnown RBP4.05□□□□□ -1.76
PTCH1-218ENST00000548945 KRTAP5-2Q701N4 177 aa3.94□□□□□ -1.78
PTCH1-218ENST00000548945 LCE3CQ5T5A8 94 aa3.91□□□□□ -1.78
PTCH1-218ENST00000548945 MT1AP04731 61 aa3.88□□□□□ -1.79
PTCH1-218ENST00000548945 MUC5BQ9HC84 5762 aaPredicted RBP3.87□□□□□ -1.79
PTCH1-218ENST00000548945 AHNAKQ09666 5890 aaKnown RBP3.86□□□□□ -1.79
PTCH1-218ENST00000548945 KRTAP6-1Q3LI64 71 aa3.85□□□□□ -1.79
PTCH1-218ENST00000548945 KRTAP5-8O75690 187 aa3.84□□□□□ -1.79
PTCH1-218ENST00000548945 MUC5ACP98088 5654 aa3.84□□□□□ -1.8
PTCH1-218ENST00000548945 KRTAP6-2Q3LI66 62 aa3.73□□□□□ -1.81
PTCH1-218ENST00000548945 LUZP6Q538Z0 58 aa3.69□□□□□ -1.82
PTCH1-218ENST00000548945 KRTAP9-6A8MVA2 160 aa3.67□□□□□ -1.82
PTCH1-218ENST00000548945 OBSCNQ5VST9 7968 aa3.67□□□□□ -1.82
PTCH1-218ENST00000548945 MT3P25713 68 aa3.57□□□□□ -1.84
PTCH1-218ENST00000548945 KRTAP5-1Q6L8H4 278 aa3.57□□□□□ -1.84
PTCH1-218ENST00000548945 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
PTCH1-218ENST00000548945 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
PTCH1-218ENST00000548945 H3BS24 57 aa3.16□□□□□ -1.9
PTCH1-218ENST00000548945 LCE1BQ5T7P3 118 aa3.12□□□□□ -1.91
PTCH1-218ENST00000548945 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
PTCH1-218ENST00000548945 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.1□□□□□ -1.91
PTCH1-218ENST00000548945 A0A0A0MQY5 61 aa3.09□□□□□ -1.91
PTCH1-218ENST00000548945 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
PTCH1-218ENST00000548945 INE1O15225 51 aa2.92□□□□□ -1.94
PTCH1-218ENST00000548945 LCE3EQ5T5B0 92 aa2.84□□□□□ -1.95
PTCH1-218ENST00000548945 KRTAP5-11Q6L8G4 156 aa2.84□□□□□ -1.95
PTCH1-218ENST00000548945 LCE1FQ5T754 118 aa2.83□□□□□ -1.96
PTCH1-218ENST00000548945 PHGR1C9JFL3 82 aa2.62□□□□□ -1.99
PTCH1-218ENST00000548945 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
PTCH1-218ENST00000548945 KRTAP21-2Q3LI59 83 aa2.55□□□□□ -2
PTCH1-218ENST00000548945 PRM1P04553 51 aa2.42□□□□□ -2.02
PTCH1-218ENST00000548945 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
PTCH1-218ENST00000548945 KRTAP21-1Q3LI58 79 aa2.02□□□□□ -2.09
PTCH1-218ENST00000548945 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 33.3 ms