RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 KRTAP5-4Q6L8H1 288 aa5.78□□□□□ -1.48
CLSTN3-216ENST00000545663 A0A0D9SG42 100 aa5.77□□□□□ -1.49
CLSTN3-216ENST00000545663 KRTAP19-7Q3SYF9 63 aa5.77□□□□□ -1.49
CLSTN3-216ENST00000545663 MT1EP04732 61 aa5.75□□□□□ -1.49
CLSTN3-216ENST00000545663 CAMK2N1Q7Z7J9 78 aa5.74□□□□□ -1.49
CLSTN3-216ENST00000545663 PSPHP1O15172 72 aa5.72□□□□□ -1.49
CLSTN3-216ENST00000545663 SPINT4Q6UDR6 99 aa5.71□□□□□ -1.5
CLSTN3-216ENST00000545663 MIR22HGQ0VDD5 57 aa5.69□□□□□ -1.5
CLSTN3-216ENST00000545663 KRTAP12-1P59990 96 aa5.67□□□□□ -1.5
CLSTN3-216ENST00000545663 AHNAKQ09666 5890 aaKnown RBP5.66□□□□□ -1.5
CLSTN3-216ENST00000545663 A8MU10 97 aa5.65□□□□□ -1.5
CLSTN3-216ENST00000545663 A6NED7 52 aa5.62□□□□□ -1.51
CLSTN3-216ENST00000545663 K7ERS5 55 aa5.62□□□□□ -1.51
CLSTN3-216ENST00000545663 MT1GP13640 62 aa5.6□□□□□ -1.51
CLSTN3-216ENST00000545663 KRTAP4-3Q9BYR4 195 aa5.56□□□□□ -1.52
CLSTN3-216ENST00000545663 MT1MQ8N339 61 aa5.54□□□□□ -1.52
CLSTN3-216ENST00000545663 KRTAP20-2Q3LI61 65 aa5.53□□□□□ -1.52
CLSTN3-216ENST00000545663 PP632Q6XCG6 107 aa5.51□□□□□ -1.53
CLSTN3-216ENST00000545663 MUC5ACP98088 5654 aa5.5□□□□□ -1.53
CLSTN3-216ENST00000545663 CDC42SE1Q9NRR8 79 aa5.46□□□□□ -1.54
CLSTN3-216ENST00000545663 MUC5BQ9HC84 5762 aaPredicted RBP5.44□□□□□ -1.54
CLSTN3-216ENST00000545663 KRTAP19-5Q3LI72 72 aa5.41□□□□□ -1.54
CLSTN3-216ENST00000545663 TNP1P09430 55 aa5.4□□□□□ -1.54
CLSTN3-216ENST00000545663 C10orf95Q9H7T3 257 aa5.37□□□□□ -1.55
CLSTN3-216ENST00000545663 MT1LQ93083 61 aa5.34□□□□□ -1.55
CLSTN3-216ENST00000545663 KRTAP25-1Q3LHN0 102 aa5.3□□□□□ -1.56
CLSTN3-216ENST00000545663 KRTAP4-11Q9BYQ6 195 aa5.27□□□□□ -1.57
CLSTN3-216ENST00000545663 SVIPQ8NHG7 77 aa5.26□□□□□ -1.57
CLSTN3-216ENST00000545663 KRTAP4-7Q9BYR0 210 aa5.25□□□□□ -1.57
CLSTN3-216ENST00000545663 BRK1Q8WUW1 75 aa5.23□□□□□ -1.57
CLSTN3-216ENST00000545663 ROMO1P60602 79 aa5.21□□□□□ -1.58
CLSTN3-216ENST00000545663 KRTAP5-8O75690 187 aa5.2□□□□□ -1.58
CLSTN3-216ENST00000545663 KRTAP12-4P60329 112 aa5.2□□□□□ -1.58
CLSTN3-216ENST00000545663 KRTAP23-1A1A580 65 aa5.16□□□□□ -1.58
CLSTN3-216ENST00000545663 KRTAP5-5Q701N2 237 aaPredicted RBP5.16□□□□□ -1.58
CLSTN3-216ENST00000545663 SYNE1Q8NF91 8797 aaKnown RBP5.16□□□□□ -1.58
CLSTN3-216ENST00000545663 LCE3AQ5TA76 89 aa5.13□□□□□ -1.59
CLSTN3-216ENST00000545663 KRTAP12-3P60328 96 aa5□□□□□ -1.61
CLSTN3-216ENST00000545663 KRTAP9-9Q9BYP9 154 aa4.98□□□□□ -1.61
CLSTN3-216ENST00000545663 PMAIP1Q13794 54 aa4.97□□□□□ -1.61
CLSTN3-216ENST00000545663 PRO0628Q9UI54 55 aa4.94□□□□□ -1.62
CLSTN3-216ENST00000545663 LOC100996750A0A140TA64 210 aa4.92□□□□□ -1.62
CLSTN3-216ENST00000545663 KRTAP19-4Q3LI73 84 aa4.92□□□□□ -1.62
CLSTN3-216ENST00000545663 OBSCNQ5VST9 7968 aa4.9□□□□□ -1.62
CLSTN3-216ENST00000545663 KRTAP5-2Q701N4 177 aa4.9□□□□□ -1.63
CLSTN3-216ENST00000545663 KRTAP15-1Q3LI76 137 aa4.81□□□□□ -1.64
CLSTN3-216ENST00000545663 LCE3CQ5T5A8 94 aa4.63□□□□□ -1.67
CLSTN3-216ENST00000545663 KTN1-AS1Q86SY8 53 aa4.63□□□□□ -1.67
CLSTN3-216ENST00000545663 KRTAP6-1Q3LI64 71 aa4.59□□□□□ -1.67
CLSTN3-216ENST00000545663 KRTAP5-1Q6L8H4 278 aa4.59□□□□□ -1.67
CLSTN3-216ENST00000545663 KRTAP6-2Q3LI66 62 aa4.57□□□□□ -1.68
CLSTN3-216ENST00000545663 PRAC1Q96KF2 57 aa4.57□□□□□ -1.68
CLSTN3-216ENST00000545663 KRTAP9-4Q9BYQ2 154 aa4.54□□□□□ -1.68
CLSTN3-216ENST00000545663 MT1AP04731 61 aa4.5□□□□□ -1.69
CLSTN3-216ENST00000545663 KRTAP9-6A8MVA2 160 aa4.25□□□□□ -1.73
CLSTN3-216ENST00000545663 MT3P25713 68 aa4.14□□□□□ -1.75
CLSTN3-216ENST00000545663 LUZP6Q538Z0 58 aa4□□□□□ -1.77
CLSTN3-216ENST00000545663 LCE1EQ5T753 118 aa4□□□□□ -1.77
CLSTN3-216ENST00000545663 KRTAP4-12Q9BQ66 201 aa3.97□□□□□ -1.77
CLSTN3-216ENST00000545663 KRTAP4-2Q9BYR5 136 aa3.97□□□□□ -1.77
CLSTN3-216ENST00000545663 LCE1BQ5T7P3 118 aa3.94□□□□□ -1.78
CLSTN3-216ENST00000545663 PHGR1C9JFL3 82 aa3.73□□□□□ -1.81
CLSTN3-216ENST00000545663 LCE1CQ5T751 118 aa3.73□□□□□ -1.81
CLSTN3-216ENST00000545663 H3BS24 57 aa3.72□□□□□ -1.81
CLSTN3-216ENST00000545663 KRTAP5-11Q6L8G4 156 aa3.68□□□□□ -1.82
CLSTN3-216ENST00000545663 LCE1FQ5T754 118 aa3.53□□□□□ -1.84
CLSTN3-216ENST00000545663 A0A0A0MQY5 61 aa3.47□□□□□ -1.85
CLSTN3-216ENST00000545663 NDUFAF8A1L188 74 aa3.46□□□□□ -1.86
CLSTN3-216ENST00000545663 LCE3DQ9BYE3 92 aa3.44□□□□□ -1.86
CLSTN3-216ENST00000545663 LCE3EQ5T5B0 92 aa3.3□□□□□ -1.88
CLSTN3-216ENST00000545663 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
CLSTN3-216ENST00000545663 MUC19Q7Z5P9 8384 aa3.07□□□□□ -1.92
CLSTN3-216ENST00000545663 KRTAP21-2Q3LI59 83 aa3.03□□□□□ -1.92
CLSTN3-216ENST00000545663 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
CLSTN3-216ENST00000545663 INE1O15225 51 aa2.96□□□□□ -1.94
CLSTN3-216ENST00000545663 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
CLSTN3-216ENST00000545663 PRM1P04553 51 aa2.63□□□□□ -1.99
CLSTN3-216ENST00000545663 MUC16Q8WXI7 14507 aa2.06□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 63.7 ms