RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 A8MU10 97 aa4.29□□□□□ -1.72
YBX3-216ENST00000544622 DSTQ03001 7570 aaKnown RBP4.29□□□□□ -1.72
YBX3-216ENST00000544622 LINC01558Q9Y6Z2 57 aa4.28□□□□□ -1.72
YBX3-216ENST00000544622 MT1EP04732 61 aa4.26□□□□□ -1.73
YBX3-216ENST00000544622 TMEM258P61165 79 aa4.26□□□□□ -1.73
YBX3-216ENST00000544622 PRR15LQ9BU68 103 aa4.23□□□□□ -1.73
YBX3-216ENST00000544622 KRTAP19-3Q7Z4W3 81 aa4.21□□□□□ -1.74
YBX3-216ENST00000544622 C10orf95Q9H7T3 257 aa4.2□□□□□ -1.74
YBX3-216ENST00000544622 KRTAP5-3Q6L8H2 238 aa4.19□□□□□ -1.74
YBX3-216ENST00000544622 KRTAP19-5Q3LI72 72 aa4.18□□□□□ -1.74
YBX3-216ENST00000544622 UQCR11O14957 56 aa4.13□□□□□ -1.75
YBX3-216ENST00000544622 TNP1P09430 55 aa4.13□□□□□ -1.75
YBX3-216ENST00000544622 MT1GP13640 62 aa4.12□□□□□ -1.75
YBX3-216ENST00000544622 LCE3AQ5TA76 89 aa4.11□□□□□ -1.75
YBX3-216ENST00000544622 MT1LQ93083 61 aa4.08□□□□□ -1.76
YBX3-216ENST00000544622 PP632Q6XCG6 107 aa4.04□□□□□ -1.76
YBX3-216ENST00000544622 MT1MQ8N339 61 aa4.04□□□□□ -1.76
YBX3-216ENST00000544622 MIR22HGQ0VDD5 57 aa4.03□□□□□ -1.76
YBX3-216ENST00000544622 Q1T7F1 81 aa4.03□□□□□ -1.76
YBX3-216ENST00000544622 V9GYY9 64 aa4.01□□□□□ -1.77
YBX3-216ENST00000544622 PSPHP1O15172 72 aa3.97□□□□□ -1.77
YBX3-216ENST00000544622 KRTAP12-3P60328 96 aa3.96□□□□□ -1.78
YBX3-216ENST00000544622 KRTAP25-1Q3LHN0 102 aa3.94□□□□□ -1.78
YBX3-216ENST00000544622 KRTAP4-3Q9BYR4 195 aa3.94□□□□□ -1.78
YBX3-216ENST00000544622 K7ERS5 55 aa3.9□□□□□ -1.79
YBX3-216ENST00000544622 RPS28P62857 69 aaKnown RBP3.87□□□□□ -1.79
YBX3-216ENST00000544622 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
YBX3-216ENST00000544622 HMCN1Q96RW7 5635 aa3.85□□□□□ -1.79
YBX3-216ENST00000544622 A6NED7 52 aa3.82□□□□□ -1.8
YBX3-216ENST00000544622 GPR98Q8WXG9 6306 aa3.8□□□□□ -1.8
YBX3-216ENST00000544622 MT4P47944 62 aa3.79□□□□□ -1.8
YBX3-216ENST00000544622 KRTAP5-5Q701N2 237 aaPredicted RBP3.75□□□□□ -1.81
YBX3-216ENST00000544622 CDC42SE1Q9NRR8 79 aa3.73□□□□□ -1.81
YBX3-216ENST00000544622 KRTAP15-1Q3LI76 137 aa3.72□□□□□ -1.81
YBX3-216ENST00000544622 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
YBX3-216ENST00000544622 ROMO1P60602 79 aa3.69□□□□□ -1.82
YBX3-216ENST00000544622 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
YBX3-216ENST00000544622 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
YBX3-216ENST00000544622 KRTAP20-2Q3LI61 65 aa3.61□□□□□ -1.83
YBX3-216ENST00000544622 PRAC1Q96KF2 57 aa3.61□□□□□ -1.83
YBX3-216ENST00000544622 AHNAK2Q8IVF2 5795 aa3.59□□□□□ -1.83
YBX3-216ENST00000544622 KRTAP5-10Q6L8G5 202 aa3.58□□□□□ -1.84
YBX3-216ENST00000544622 KRTAP12-4P60329 112 aa3.56□□□□□ -1.84
YBX3-216ENST00000544622 KRTAP9-6A8MVA2 160 aa3.49□□□□□ -1.85
YBX3-216ENST00000544622 MT1AP04731 61 aa3.46□□□□□ -1.86
YBX3-216ENST00000544622 KRTAP6-1Q3LI64 71 aa3.44□□□□□ -1.86
YBX3-216ENST00000544622 KRTAP5-7Q6L8G8 165 aa3.42□□□□□ -1.86
YBX3-216ENST00000544622 NDUFAF8A1L188 74 aa3.39□□□□□ -1.87
YBX3-216ENST00000544622 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
YBX3-216ENST00000544622 OBSCNQ5VST9 7968 aa3.34□□□□□ -1.88
YBX3-216ENST00000544622 BRK1Q8WUW1 75 aa3.31□□□□□ -1.88
YBX3-216ENST00000544622 KRTAP6-2Q3LI66 62 aa3.27□□□□□ -1.89
YBX3-216ENST00000544622 KRTAP5-8O75690 187 aa3.19□□□□□ -1.9
YBX3-216ENST00000544622 MT3P25713 68 aa3.18□□□□□ -1.9
YBX3-216ENST00000544622 PRO0628Q9UI54 55 aa3.16□□□□□ -1.9
YBX3-216ENST00000544622 PMAIP1Q13794 54 aa3.13□□□□□ -1.91
YBX3-216ENST00000544622 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.08□□□□□ -1.92
YBX3-216ENST00000544622 KRTAP5-11Q6L8G4 156 aa3.04□□□□□ -1.92
YBX3-216ENST00000544622 KRTAP5-1Q6L8H4 278 aa3.04□□□□□ -1.92
YBX3-216ENST00000544622 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.92
YBX3-216ENST00000544622 MUC5ACP98088 5654 aa2.99□□□□□ -1.93
YBX3-216ENST00000544622 LCE1EQ5T753 118 aa2.93□□□□□ -1.94
YBX3-216ENST00000544622 AHNAKQ09666 5890 aaKnown RBP2.92□□□□□ -1.94
YBX3-216ENST00000544622 LUZP6Q538Z0 58 aa2.91□□□□□ -1.94
YBX3-216ENST00000544622 KTN1-AS1Q86SY8 53 aa2.8□□□□□ -1.96
YBX3-216ENST00000544622 LCE1CQ5T751 118 aa2.72□□□□□ -1.97
YBX3-216ENST00000544622 LCE1BQ5T7P3 118 aa2.72□□□□□ -1.97
YBX3-216ENST00000544622 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
YBX3-216ENST00000544622 LCE3DQ9BYE3 92 aa2.64□□□□□ -1.99
YBX3-216ENST00000544622 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
YBX3-216ENST00000544622 LCE3EQ5T5B0 92 aa2.49□□□□□ -2.01
YBX3-216ENST00000544622 KRTAP21-2Q3LI59 83 aa2.3□□□□□ -2.04
YBX3-216ENST00000544622 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
YBX3-216ENST00000544622 INE1O15225 51 aa2.04□□□□□ -2.08
YBX3-216ENST00000544622 MUC19Q7Z5P9 8384 aa2.01□□□□□ -2.09
YBX3-216ENST00000544622 PRM1P04553 51 aa1.89□□□□□ -2.11
YBX3-216ENST00000544622 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
YBX3-216ENST00000544622 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 139.4 ms