RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 SPINT4Q6UDR6 99 aa2.25□□□□□ -2.05
CLSTN3-215ENST00000544584 LINC01558Q9Y6Z2 57 aa2.25□□□□□ -2.05
CLSTN3-215ENST00000544584 KRTAP10-12P60413 245 aa2.23□□□□□ -2.05
CLSTN3-215ENST00000544584 BRK1Q8WUW1 75 aa2.23□□□□□ -2.05
CLSTN3-215ENST00000544584 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
CLSTN3-215ENST00000544584 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
CLSTN3-215ENST00000544584 SPATA8Q6RVD6 105 aa2.22□□□□□ -2.05
CLSTN3-215ENST00000544584 CDC42SE1Q9NRR8 79 aa2.22□□□□□ -2.05
CLSTN3-215ENST00000544584 KRTAP13-4Q3LI77 160 aa2.21□□□□□ -2.06
CLSTN3-215ENST00000544584 KRTAP10-7P60409 375 aaPredicted RBP2.2□□□□□ -2.06
CLSTN3-215ENST00000544584 PMAIP1Q13794 54 aa2.2□□□□□ -2.06
CLSTN3-215ENST00000544584 K7ERS5 55 aa2.19□□□□□ -2.06
CLSTN3-215ENST00000544584 UQCR11O14957 56 aa2.19□□□□□ -2.06
CLSTN3-215ENST00000544584 KRTAP5-3Q6L8H2 238 aa2.19□□□□□ -2.06
CLSTN3-215ENST00000544584 KTN1-AS1Q86SY8 53 aa2.18□□□□□ -2.06
CLSTN3-215ENST00000544584 A6NED7 52 aa2.16□□□□□ -2.06
CLSTN3-215ENST00000544584 PSPHP1O15172 72 aa2.16□□□□□ -2.06
CLSTN3-215ENST00000544584 TNP1P09430 55 aa2.16□□□□□ -2.06
CLSTN3-215ENST00000544584 KRTAP12-1P59990 96 aa2.16□□□□□ -2.06
CLSTN3-215ENST00000544584 HMCN1Q96RW7 5635 aa2.14□□□□□ -2.07
CLSTN3-215ENST00000544584 SPRR5A0A1B0GTR4 108 aa2.12□□□□□ -2.07
CLSTN3-215ENST00000544584 PP632Q6XCG6 107 aa2.12□□□□□ -2.07
CLSTN3-215ENST00000544584 A8MU10 97 aa2.11□□□□□ -2.07
CLSTN3-215ENST00000544584 MIR22HGQ0VDD5 57 aa2.11□□□□□ -2.07
CLSTN3-215ENST00000544584 C10orf95Q9H7T3 257 aa2.09□□□□□ -2.07
CLSTN3-215ENST00000544584 MT1EP04732 61 aa2.07□□□□□ -2.08
CLSTN3-215ENST00000544584 KRTAP19-3Q7Z4W3 81 aa2.07□□□□□ -2.08
CLSTN3-215ENST00000544584 MT1GP13640 62 aa2.06□□□□□ -2.08
CLSTN3-215ENST00000544584 KRTAP25-1Q3LHN0 102 aa2.06□□□□□ -2.08
CLSTN3-215ENST00000544584 KRTAP19-5Q3LI72 72 aa2.05□□□□□ -2.08
CLSTN3-215ENST00000544584 KRTAP19-7Q3SYF9 63 aa2.05□□□□□ -2.08
CLSTN3-215ENST00000544584 MT4P47944 62 aa2.04□□□□□ -2.08
CLSTN3-215ENST00000544584 KRTAP23-1A1A580 65 aa2.01□□□□□ -2.09
CLSTN3-215ENST00000544584 LCE3AQ5TA76 89 aa2.01□□□□□ -2.09
CLSTN3-215ENST00000544584 KRTAP12-3P60328 96 aa1.99□□□□□ -2.09
CLSTN3-215ENST00000544584 KRTAP15-1Q3LI76 137 aa1.99□□□□□ -2.09
CLSTN3-215ENST00000544584 MT1LQ93083 61 aa1.99□□□□□ -2.09
CLSTN3-215ENST00000544584 MT1MQ8N339 61 aa1.96□□□□□ -2.1
CLSTN3-215ENST00000544584 KRTAP5-4Q6L8H1 288 aa1.95□□□□□ -2.1
CLSTN3-215ENST00000544584 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
CLSTN3-215ENST00000544584 ROMO1P60602 79 aa1.93□□□□□ -2.1
CLSTN3-215ENST00000544584 MUC5ACP98088 5654 aa1.9□□□□□ -2.1
CLSTN3-215ENST00000544584 MUC5BQ9HC84 5762 aaPredicted RBP1.89□□□□□ -2.11
CLSTN3-215ENST00000544584 PRAC1Q96KF2 57 aa1.87□□□□□ -2.11
CLSTN3-215ENST00000544584 KRTAP12-4P60329 112 aa1.85□□□□□ -2.11
CLSTN3-215ENST00000544584 KRTAP20-2Q3LI61 65 aa1.85□□□□□ -2.11
CLSTN3-215ENST00000544584 KRTAP4-3Q9BYR4 195 aa1.84□□□□□ -2.11
CLSTN3-215ENST00000544584 LCE3CQ5T5A8 94 aa1.83□□□□□ -2.12
CLSTN3-215ENST00000544584 KRTAP5-8O75690 187 aa1.78□□□□□ -2.12
CLSTN3-215ENST00000544584 KRTAP5-5Q701N2 237 aaPredicted RBP1.77□□□□□ -2.13
CLSTN3-215ENST00000544584 MT1AP04731 61 aa1.71□□□□□ -2.14
CLSTN3-215ENST00000544584 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
CLSTN3-215ENST00000544584 SYNE1Q8NF91 8797 aaKnown RBP1.69□□□□□ -2.14
CLSTN3-215ENST00000544584 LUZP6Q538Z0 58 aa1.68□□□□□ -2.14
CLSTN3-215ENST00000544584 KRTAP6-1Q3LI64 71 aa1.65□□□□□ -2.15
CLSTN3-215ENST00000544584 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.65□□□□□ -2.15
CLSTN3-215ENST00000544584 NDUFAF8A1L188 74 aa1.63□□□□□ -2.15
CLSTN3-215ENST00000544584 LCE1EQ5T753 118 aa1.63□□□□□ -2.15
CLSTN3-215ENST00000544584 MT3P25713 68 aa1.62□□□□□ -2.15
CLSTN3-215ENST00000544584 KRTAP5-11Q6L8G4 156 aa1.62□□□□□ -2.15
CLSTN3-215ENST00000544584 A0A0A0MQY5 61 aa1.61□□□□□ -2.15
CLSTN3-215ENST00000544584 KRTAP9-6A8MVA2 160 aa1.61□□□□□ -2.15
CLSTN3-215ENST00000544584 KRTAP6-2Q3LI66 62 aa1.6□□□□□ -2.15
CLSTN3-215ENST00000544584 OBSCNQ5VST9 7968 aa1.59□□□□□ -2.15
CLSTN3-215ENST00000544584 KRTAP5-1Q6L8H4 278 aa1.54□□□□□ -2.16
CLSTN3-215ENST00000544584 INE1O15225 51 aa1.52□□□□□ -2.17
CLSTN3-215ENST00000544584 LCE3DQ9BYE3 92 aa1.36□□□□□ -2.19
CLSTN3-215ENST00000544584 LCE1CQ5T751 118 aa1.35□□□□□ -2.19
CLSTN3-215ENST00000544584 LCE1BQ5T7P3 118 aa1.35□□□□□ -2.19
CLSTN3-215ENST00000544584 KRTAP4-4Q9BYR3 166 aa1.35□□□□□ -2.19
CLSTN3-215ENST00000544584 PHGR1C9JFL3 82 aa1.3□□□□□ -2.2
CLSTN3-215ENST00000544584 LCE1FQ5T754 118 aa1.29□□□□□ -2.2
CLSTN3-215ENST00000544584 LCE3EQ5T5B0 92 aa1.28□□□□□ -2.2
CLSTN3-215ENST00000544584 KRTAP21-2Q3LI59 83 aa1.08□□□□□ -2.24
CLSTN3-215ENST00000544584 MUC19Q7Z5P9 8384 aa1.02□□□□□ -2.25
CLSTN3-215ENST00000544584 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
CLSTN3-215ENST00000544584 PRM1P04553 51 aa0.94□□□□□ -2.26
CLSTN3-215ENST00000544584 MUC16Q8WXI7 14507 aa0.77□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 42.4 ms