RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 SPRR2DP22532 72 aa3.66□□□□□ -1.82
YBX3-212ENST00000542002 PRR15LQ9BU68 103 aa3.65□□□□□ -1.83
YBX3-212ENST00000542002 C10orf95Q9H7T3 257 aa3.64□□□□□ -1.83
YBX3-212ENST00000542002 KRTAP23-1A1A580 65 aa3.62□□□□□ -1.83
YBX3-212ENST00000542002 MT1EP04732 61 aa3.62□□□□□ -1.83
YBX3-212ENST00000542002 KRTAP19-5Q3LI72 72 aa3.6□□□□□ -1.83
YBX3-212ENST00000542002 KRTAP2-2Q9BYT5 123 aa3.6□□□□□ -1.83
YBX3-212ENST00000542002 KRTAP2-1Q9BYU5 128 aa3.6□□□□□ -1.83
YBX3-212ENST00000542002 UQCR11O14957 56 aa3.57□□□□□ -1.84
YBX3-212ENST00000542002 KRTAP19-3Q7Z4W3 81 aa3.55□□□□□ -1.84
YBX3-212ENST00000542002 LCE3AQ5TA76 89 aa3.54□□□□□ -1.84
YBX3-212ENST00000542002 TNP1P09430 55 aa3.53□□□□□ -1.84
YBX3-212ENST00000542002 PSPHP1O15172 72 aa3.52□□□□□ -1.85
YBX3-212ENST00000542002 MIR22HGQ0VDD5 57 aa3.51□□□□□ -1.85
YBX3-212ENST00000542002 Q1T7F1 81 aa3.51□□□□□ -1.85
YBX3-212ENST00000542002 DSTQ03001 7570 aaKnown RBP3.5□□□□□ -1.85
YBX3-212ENST00000542002 MT1GP13640 62 aa3.47□□□□□ -1.85
YBX3-212ENST00000542002 MT1LQ93083 61 aa3.47□□□□□ -1.85
YBX3-212ENST00000542002 V9GYY9 64 aa3.47□□□□□ -1.85
YBX3-212ENST00000542002 MT1MQ8N339 61 aa3.44□□□□□ -1.86
YBX3-212ENST00000542002 PCP4P48539 62 aa3.43□□□□□ -1.86
YBX3-212ENST00000542002 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
YBX3-212ENST00000542002 KRTAP4-3Q9BYR4 195 aa3.41□□□□□ -1.86
YBX3-212ENST00000542002 RPS28P62857 69 aaKnown RBP3.4□□□□□ -1.87
YBX3-212ENST00000542002 KRTAP12-3P60328 96 aa3.39□□□□□ -1.87
YBX3-212ENST00000542002 PP632Q6XCG6 107 aa3.39□□□□□ -1.87
YBX3-212ENST00000542002 KRTAP25-1Q3LHN0 102 aa3.37□□□□□ -1.87
YBX3-212ENST00000542002 A6NED7 52 aa3.36□□□□□ -1.87
YBX3-212ENST00000542002 K7ERS5 55 aa3.36□□□□□ -1.87
YBX3-212ENST00000542002 KRTAP5-1Q6L8H4 278 aa3.28□□□□□ -1.88
YBX3-212ENST00000542002 KRTAP5-4Q6L8H1 288 aa3.24□□□□□ -1.89
YBX3-212ENST00000542002 HMCN1Q96RW7 5635 aa3.22□□□□□ -1.89
YBX3-212ENST00000542002 MT4P47944 62 aa3.22□□□□□ -1.89
YBX3-212ENST00000542002 CDC42SE1Q9NRR8 79 aa3.22□□□□□ -1.89
YBX3-212ENST00000542002 ROMO1P60602 79 aa3.21□□□□□ -1.9
YBX3-212ENST00000542002 GPR98Q8WXG9 6306 aa3.17□□□□□ -1.9
YBX3-212ENST00000542002 KRTAP5-5Q701N2 237 aaPredicted RBP3.17□□□□□ -1.9
YBX3-212ENST00000542002 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
YBX3-212ENST00000542002 LCE3CQ5T5A8 94 aa3.14□□□□□ -1.91
YBX3-212ENST00000542002 AHNAK2Q8IVF2 5795 aa3.08□□□□□ -1.92
YBX3-212ENST00000542002 KRTAP20-2Q3LI61 65 aa3.04□□□□□ -1.92
YBX3-212ENST00000542002 KRTAP9-6A8MVA2 160 aa3.03□□□□□ -1.92
YBX3-212ENST00000542002 SYNE1Q8NF91 8797 aaKnown RBP3.01□□□□□ -1.93
YBX3-212ENST00000542002 SPRR5A0A1B0GTR4 108 aa3.01□□□□□ -1.93
YBX3-212ENST00000542002 KRTAP12-4P60329 112 aa3□□□□□ -1.93
YBX3-212ENST00000542002 KRTAP5-10Q6L8G5 202 aa2.98□□□□□ -1.93
YBX3-212ENST00000542002 BRK1Q8WUW1 75 aa2.96□□□□□ -1.94
YBX3-212ENST00000542002 KRTAP6-1Q3LI64 71 aa2.95□□□□□ -1.94
YBX3-212ENST00000542002 MT1AP04731 61 aa2.94□□□□□ -1.94
YBX3-212ENST00000542002 MT3P25713 68 aa2.89□□□□□ -1.95
YBX3-212ENST00000542002 KRTAP5-2Q701N4 177 aa2.85□□□□□ -1.95
YBX3-212ENST00000542002 KRTAP5-7Q6L8G8 165 aa2.84□□□□□ -1.95
YBX3-212ENST00000542002 KRTAP6-2Q3LI66 62 aa2.8□□□□□ -1.96
YBX3-212ENST00000542002 PMAIP1Q13794 54 aa2.79□□□□□ -1.96
YBX3-212ENST00000542002 OBSCNQ5VST9 7968 aa2.74□□□□□ -1.97
YBX3-212ENST00000542002 PRAC1Q96KF2 57 aa2.73□□□□□ -1.97
YBX3-212ENST00000542002 KRTAP5-8O75690 187 aa2.68□□□□□ -1.98
YBX3-212ENST00000542002 PRO0628Q9UI54 55 aa2.62□□□□□ -1.99
YBX3-212ENST00000542002 LCE1FQ5T754 118 aa2.58□□□□□ -2
YBX3-212ENST00000542002 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
YBX3-212ENST00000542002 AHNAKQ09666 5890 aaKnown RBP2.51□□□□□ -2.01
YBX3-212ENST00000542002 MUC5ACP98088 5654 aa2.5□□□□□ -2.01
YBX3-212ENST00000542002 KTN1-AS1Q86SY8 53 aa2.49□□□□□ -2.01
YBX3-212ENST00000542002 SVIPQ8NHG7 77 aa2.35□□□□□ -2.03
YBX3-212ENST00000542002 LCE1BQ5T7P3 118 aa2.3□□□□□ -2.04
YBX3-212ENST00000542002 LCE1CQ5T751 118 aa2.27□□□□□ -2.05
YBX3-212ENST00000542002 LCE3DQ9BYE3 92 aa2.26□□□□□ -2.05
YBX3-212ENST00000542002 LCE3EQ5T5B0 92 aa2.19□□□□□ -2.06
YBX3-212ENST00000542002 LUZP6Q538Z0 58 aa2.18□□□□□ -2.06
YBX3-212ENST00000542002 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
YBX3-212ENST00000542002 NDUFAF8A1L188 74 aa1.87□□□□□ -2.11
YBX3-212ENST00000542002 MUC19Q7Z5P9 8384 aa1.8□□□□□ -2.12
YBX3-212ENST00000542002 PHGR1C9JFL3 82 aa1.78□□□□□ -2.12
YBX3-212ENST00000542002 PRM1P04553 51 aa1.66□□□□□ -2.14
YBX3-212ENST00000542002 A0A0A0MQY5 61 aa1.65□□□□□ -2.15
YBX3-212ENST00000542002 INE1O15225 51 aa1.45□□□□□ -2.18
YBX3-212ENST00000542002 KRTAP21-1Q3LI58 79 aa1.28□□□□□ -2.2
YBX3-212ENST00000542002 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 64.5 ms