RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 KRTAP12-2P59991 146 aa3.52□□□□□ -1.85
CLSTN3-212ENST00000541770 SPINT4Q6UDR6 99 aa3.52□□□□□ -1.85
CLSTN3-212ENST00000541770 KRTAP12-1P59990 96 aa3.5□□□□□ -1.85
CLSTN3-212ENST00000541770 CAMK2N1Q7Z7J9 78 aa3.5□□□□□ -1.85
CLSTN3-212ENST00000541770 KRTAP9-9Q9BYP9 154 aa3.48□□□□□ -1.85
CLSTN3-212ENST00000541770 KRTAP9-4Q9BYQ2 154 aa3.48□□□□□ -1.85
CLSTN3-212ENST00000541770 PMAIP1Q13794 54 aa3.47□□□□□ -1.85
CLSTN3-212ENST00000541770 KRTAP4-9Q9BYQ8 210 aa3.45□□□□□ -1.86
CLSTN3-212ENST00000541770 KRTAP10-12P60413 245 aa3.44□□□□□ -1.86
CLSTN3-212ENST00000541770 KRTAP10-7P60409 375 aaPredicted RBP3.43□□□□□ -1.86
CLSTN3-212ENST00000541770 KRTAP15-1Q3LI76 137 aa3.39□□□□□ -1.87
CLSTN3-212ENST00000541770 DSTQ03001 7570 aaKnown RBP3.37□□□□□ -1.87
CLSTN3-212ENST00000541770 LCE1DQ5T752 114 aa3.37□□□□□ -1.87
CLSTN3-212ENST00000541770 A0A0A0MQY5 61 aa3.36□□□□□ -1.87
CLSTN3-212ENST00000541770 ROMO1P60602 79 aa3.35□□□□□ -1.87
CLSTN3-212ENST00000541770 LCE5AQ5TCM9 118 aa3.33□□□□□ -1.88
CLSTN3-212ENST00000541770 C10orf95Q9H7T3 257 aa3.33□□□□□ -1.88
CLSTN3-212ENST00000541770 TNP1P09430 55 aa3.3□□□□□ -1.88
CLSTN3-212ENST00000541770 KTN1-AS1Q86SY8 53 aa3.3□□□□□ -1.88
CLSTN3-212ENST00000541770 KRTAP5-10Q6L8G5 202 aa3.29□□□□□ -1.88
CLSTN3-212ENST00000541770 MT4P47944 62 aa3.27□□□□□ -1.89
CLSTN3-212ENST00000541770 KRTAP4-7Q9BYR0 210 aa3.24□□□□□ -1.89
CLSTN3-212ENST00000541770 KRTAP19-3Q7Z4W3 81 aa3.23□□□□□ -1.89
CLSTN3-212ENST00000541770 KRTAP25-1Q3LHN0 102 aa3.22□□□□□ -1.89
CLSTN3-212ENST00000541770 KRTAP19-7Q3SYF9 63 aa3.22□□□□□ -1.89
CLSTN3-212ENST00000541770 KRTAP5-7Q6L8G8 165 aa3.21□□□□□ -1.9
CLSTN3-212ENST00000541770 LCE3AQ5TA76 89 aa3.2□□□□□ -1.9
CLSTN3-212ENST00000541770 PRAC1Q96KF2 57 aa3.2□□□□□ -1.9
CLSTN3-212ENST00000541770 MT1EP04732 61 aa3.19□□□□□ -1.9
CLSTN3-212ENST00000541770 HMCN1Q96RW7 5635 aa3.17□□□□□ -1.9
CLSTN3-212ENST00000541770 AHNAK2Q8IVF2 5795 aa3.17□□□□□ -1.9
CLSTN3-212ENST00000541770 KRTAP19-5Q3LI72 72 aa3.17□□□□□ -1.9
CLSTN3-212ENST00000541770 KRTAP4-11Q9BYQ6 195 aa3.16□□□□□ -1.9
CLSTN3-212ENST00000541770 MT1GP13640 62 aa3.12□□□□□ -1.91
CLSTN3-212ENST00000541770 PP632Q6XCG6 107 aa3.12□□□□□ -1.91
CLSTN3-212ENST00000541770 SPRR5A0A1B0GTR4 108 aa3.11□□□□□ -1.91
CLSTN3-212ENST00000541770 KRTAP5-3Q6L8H2 238 aa3.1□□□□□ -1.91
CLSTN3-212ENST00000541770 KRTAP12-3P60328 96 aa3.09□□□□□ -1.91
CLSTN3-212ENST00000541770 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
CLSTN3-212ENST00000541770 MT1MQ8N339 61 aa3.07□□□□□ -1.92
CLSTN3-212ENST00000541770 MT1LQ93083 61 aa3.07□□□□□ -1.92
CLSTN3-212ENST00000541770 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
CLSTN3-212ENST00000541770 KRTAP4-3Q9BYR4 195 aa3.03□□□□□ -1.92
CLSTN3-212ENST00000541770 KRTAP20-2Q3LI61 65 aa2.94□□□□□ -1.94
CLSTN3-212ENST00000541770 LCE3CQ5T5A8 94 aa2.86□□□□□ -1.95
CLSTN3-212ENST00000541770 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
CLSTN3-212ENST00000541770 KRTAP5-5Q701N2 237 aaPredicted RBP2.8□□□□□ -1.96
CLSTN3-212ENST00000541770 MUC5ACP98088 5654 aa2.73□□□□□ -1.97
CLSTN3-212ENST00000541770 MT3P25713 68 aa2.72□□□□□ -1.97
CLSTN3-212ENST00000541770 SYNE1Q8NF91 8797 aaKnown RBP2.72□□□□□ -1.97
CLSTN3-212ENST00000541770 AHNAKQ09666 5890 aaKnown RBP2.71□□□□□ -1.98
CLSTN3-212ENST00000541770 KRTAP9-6A8MVA2 160 aa2.69□□□□□ -1.98
CLSTN3-212ENST00000541770 KRTAP5-8O75690 187 aa2.69□□□□□ -1.98
CLSTN3-212ENST00000541770 LUZP6Q538Z0 58 aa2.68□□□□□ -1.98
CLSTN3-212ENST00000541770 MUC5BQ9HC84 5762 aaPredicted RBP2.66□□□□□ -1.98
CLSTN3-212ENST00000541770 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
CLSTN3-212ENST00000541770 MT1AP04731 61 aa2.62□□□□□ -1.99
CLSTN3-212ENST00000541770 KRTAP5-2Q701N4 177 aa2.62□□□□□ -1.99
CLSTN3-212ENST00000541770 KRTAP6-1Q3LI64 71 aa2.58□□□□□ -2
CLSTN3-212ENST00000541770 KRTAP6-2Q3LI66 62 aa2.51□□□□□ -2.01
CLSTN3-212ENST00000541770 OBSCNQ5VST9 7968 aa2.49□□□□□ -2.01
CLSTN3-212ENST00000541770 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
CLSTN3-212ENST00000541770 KRTAP5-1Q6L8H4 278 aa2.41□□□□□ -2.02
CLSTN3-212ENST00000541770 LCE1EQ5T753 118 aa2.26□□□□□ -2.05
CLSTN3-212ENST00000541770 LCE1BQ5T7P3 118 aa2.18□□□□□ -2.06
CLSTN3-212ENST00000541770 INE1O15225 51 aa2.15□□□□□ -2.07
CLSTN3-212ENST00000541770 KRTAP5-11Q6L8G4 156 aa2.12□□□□□ -2.07
CLSTN3-212ENST00000541770 LCE3DQ9BYE3 92 aa2.11□□□□□ -2.07
CLSTN3-212ENST00000541770 LCE3EQ5T5B0 92 aa2.05□□□□□ -2.08
CLSTN3-212ENST00000541770 LCE1CQ5T751 118 aa2.04□□□□□ -2.08
CLSTN3-212ENST00000541770 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.97□□□□□ -2.09
CLSTN3-212ENST00000541770 PHGR1C9JFL3 82 aa1.92□□□□□ -2.1
CLSTN3-212ENST00000541770 PRM1P04553 51 aa1.74□□□□□ -2.13
CLSTN3-212ENST00000541770 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
CLSTN3-212ENST00000541770 KRTAP4-4Q9BYR3 166 aa1.64□□□□□ -2.15
CLSTN3-212ENST00000541770 MUC19Q7Z5P9 8384 aa1.54□□□□□ -2.16
CLSTN3-212ENST00000541770 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
CLSTN3-212ENST00000541770 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 129.3 ms