RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 KRTAP12-2P59991 146 aa3.72□□□□□ -1.81
CHD4-208ENST00000540960 LCE1DQ5T752 114 aa3.72□□□□□ -1.81
CHD4-208ENST00000540960 KRTAP4-9Q9BYQ8 210 aa3.72□□□□□ -1.81
CHD4-208ENST00000540960 CAMK2N1Q7Z7J9 78 aa3.7□□□□□ -1.82
CHD4-208ENST00000540960 PLAC4Q8WY50 150 aa3.7□□□□□ -1.82
CHD4-208ENST00000540960 SPRR2GQ9BYE4 73 aa3.7□□□□□ -1.82
CHD4-208ENST00000540960 DSTQ03001 7570 aaKnown RBP3.67□□□□□ -1.82
CHD4-208ENST00000540960 KRTAP10-5P60370 271 aa3.63□□□□□ -1.83
CHD4-208ENST00000540960 KRTAP25-1Q3LHN0 102 aa3.62□□□□□ -1.83
CHD4-208ENST00000540960 KRTAP5-10Q6L8G5 202 aa3.62□□□□□ -1.83
CHD4-208ENST00000540960 KRTAP4-7Q9BYR0 210 aa3.61□□□□□ -1.83
CHD4-208ENST00000540960 MT1BP07438 61 aa3.6□□□□□ -1.83
CHD4-208ENST00000540960 PRAC1Q96KF2 57 aa3.59□□□□□ -1.83
CHD4-208ENST00000540960 KRTAP19-8Q3LI54 63 aa3.58□□□□□ -1.84
CHD4-208ENST00000540960 LCE5AQ5TCM9 118 aa3.58□□□□□ -1.84
CHD4-208ENST00000540960 PP632Q6XCG6 107 aa3.58□□□□□ -1.84
CHD4-208ENST00000540960 TNP1P09430 55 aa3.56□□□□□ -1.84
CHD4-208ENST00000540960 SPRR5A0A1B0GTR4 108 aa3.55□□□□□ -1.84
CHD4-208ENST00000540960 KRTAP5-7Q6L8G8 165 aa3.54□□□□□ -1.84
CHD4-208ENST00000540960 PRO2289Q9P1D8 64 aa3.53□□□□□ -1.84
CHD4-208ENST00000540960 KRTAP15-1Q3LI76 137 aa3.52□□□□□ -1.85
CHD4-208ENST00000540960 C10orf95Q9H7T3 257 aa3.52□□□□□ -1.85
CHD4-208ENST00000540960 AHNAK2Q8IVF2 5795 aa3.5□□□□□ -1.85
CHD4-208ENST00000540960 KRTAP4-11Q9BYQ6 195 aa3.5□□□□□ -1.85
CHD4-208ENST00000540960 HMCN1Q96RW7 5635 aa3.48□□□□□ -1.85
CHD4-208ENST00000540960 KRTAP8-1Q8IUC2 63 aa3.47□□□□□ -1.85
CHD4-208ENST00000540960 KRTAP4-2Q9BYR5 136 aa3.46□□□□□ -1.86
CHD4-208ENST00000540960 MT4P47944 62 aa3.37□□□□□ -1.87
CHD4-208ENST00000540960 LUZP6Q538Z0 58 aa3.36□□□□□ -1.87
CHD4-208ENST00000540960 KRTAP5-3Q6L8H2 238 aa3.36□□□□□ -1.87
CHD4-208ENST00000540960 MT1XP80297 61 aa3.35□□□□□ -1.87
CHD4-208ENST00000540960 KRTAP10-12P60413 245 aa3.3□□□□□ -1.88
CHD4-208ENST00000540960 LCE3AQ5TA76 89 aa3.23□□□□□ -1.89
CHD4-208ENST00000540960 KRTAP12-3P60328 96 aa3.18□□□□□ -1.9
CHD4-208ENST00000540960 KRTAP10-7P60409 375 aaPredicted RBP3.18□□□□□ -1.9
CHD4-208ENST00000540960 AHNAKQ09666 5890 aaKnown RBP3.13□□□□□ -1.91
CHD4-208ENST00000540960 NDUFAF8A1L188 74 aa3.13□□□□□ -1.91
CHD4-208ENST00000540960 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
CHD4-208ENST00000540960 KRTAP19-5Q3LI72 72 aa3.06□□□□□ -1.92
CHD4-208ENST00000540960 MUC5ACP98088 5654 aa3.06□□□□□ -1.92
CHD4-208ENST00000540960 KRTAP19-7Q3SYF9 63 aa2.98□□□□□ -1.93
CHD4-208ENST00000540960 MUC5BQ9HC84 5762 aaPredicted RBP2.98□□□□□ -1.93
CHD4-208ENST00000540960 LCE3CQ5T5A8 94 aa2.97□□□□□ -1.93
CHD4-208ENST00000540960 KRTAP20-2Q3LI61 65 aa2.96□□□□□ -1.94
CHD4-208ENST00000540960 KRTAP19-3Q7Z4W3 81 aa2.96□□□□□ -1.94
CHD4-208ENST00000540960 MT1EP04732 61 aa2.95□□□□□ -1.94
CHD4-208ENST00000540960 MT1LQ93083 61 aa2.91□□□□□ -1.94
CHD4-208ENST00000540960 MT1GP13640 62 aa2.9□□□□□ -1.95
CHD4-208ENST00000540960 KRTAP5-8O75690 187 aa2.89□□□□□ -1.95
CHD4-208ENST00000540960 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.95
CHD4-208ENST00000540960 MT3P25713 68 aa2.82□□□□□ -1.96
CHD4-208ENST00000540960 INE1O15225 51 aa2.79□□□□□ -1.96
CHD4-208ENST00000540960 MT1MQ8N339 61 aa2.78□□□□□ -1.96
CHD4-208ENST00000540960 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
CHD4-208ENST00000540960 KRTAP9-6A8MVA2 160 aa2.66□□□□□ -1.98
CHD4-208ENST00000540960 KRTAP12-4P60329 112 aa2.66□□□□□ -1.98
CHD4-208ENST00000540960 SYNE1Q8NF91 8797 aaKnown RBP2.65□□□□□ -1.98
CHD4-208ENST00000540960 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
CHD4-208ENST00000540960 OBSCNQ5VST9 7968 aa2.6□□□□□ -1.99
CHD4-208ENST00000540960 LCE1FQ5T754 118 aa2.54□□□□□ -2
CHD4-208ENST00000540960 MT1AP04731 61 aa2.52□□□□□ -2.01
CHD4-208ENST00000540960 KRTAP5-1Q6L8H4 278 aa2.46□□□□□ -2.02
CHD4-208ENST00000540960 KRTAP6-1Q3LI64 71 aa2.4□□□□□ -2.03
CHD4-208ENST00000540960 KRTAP5-11Q6L8G4 156 aa2.38□□□□□ -2.03
CHD4-208ENST00000540960 LCE1EQ5T753 118 aa2.37□□□□□ -2.03
CHD4-208ENST00000540960 KRTAP6-2Q3LI66 62 aa2.31□□□□□ -2.04
CHD4-208ENST00000540960 LCE3DQ9BYE3 92 aa2.27□□□□□ -2.05
CHD4-208ENST00000540960 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
CHD4-208ENST00000540960 LCE3EQ5T5B0 92 aa2.23□□□□□ -2.05
CHD4-208ENST00000540960 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
CHD4-208ENST00000540960 LCE1BQ5T7P3 118 aa2.02□□□□□ -2.09
CHD4-208ENST00000540960 PRM1P04553 51 aa1.9□□□□□ -2.11
CHD4-208ENST00000540960 LCE1CQ5T751 118 aa1.89□□□□□ -2.11
CHD4-208ENST00000540960 KRTAP4-4Q9BYR3 166 aa1.88□□□□□ -2.11
CHD4-208ENST00000540960 MUC19Q7Z5P9 8384 aa1.65□□□□□ -2.15
CHD4-208ENST00000540960 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
CHD4-208ENST00000540960 KRTAP21-2Q3LI59 83 aa1.58□□□□□ -2.16
CHD4-208ENST00000540960 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms