RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 SPRR2AP35326 72 aa3.62□□□□□ -1.83
SNHG1-215ENST00000540904 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.62□□□□□ -1.83
SNHG1-215ENST00000540904 A8MU10 97 aa3.61□□□□□ -1.83
SNHG1-215ENST00000540904 CDC42SE1Q9NRR8 79 aa3.61□□□□□ -1.83
SNHG1-215ENST00000540904 UQCR11O14957 56 aa3.6□□□□□ -1.83
SNHG1-215ENST00000540904 MDN1Q9NU22 5596 aa3.6□□□□□ -1.83
SNHG1-215ENST00000540904 NEBP20929 6669 aa3.58□□□□□ -1.84
SNHG1-215ENST00000540904 KRTAP20-1Q3LI63 56 aa3.57□□□□□ -1.84
SNHG1-215ENST00000540904 LCE1AQ5T7P2 110 aa3.57□□□□□ -1.84
SNHG1-215ENST00000540904 MIR22HGQ0VDD5 57 aa3.55□□□□□ -1.84
SNHG1-215ENST00000540904 KRTAP5-11Q6L8G4 156 aa3.55□□□□□ -1.84
SNHG1-215ENST00000540904 A0A0A0MQY5 61 aa3.53□□□□□ -1.84
SNHG1-215ENST00000540904 KRTAP2-3P0C7H8 128 aa3.5□□□□□ -1.85
SNHG1-215ENST00000540904 PMAIP1Q13794 54 aa3.5□□□□□ -1.85
SNHG1-215ENST00000540904 KRTAP2-4Q9BYR9 128 aa3.5□□□□□ -1.85
SNHG1-215ENST00000540904 SPRR2DP22532 72 aa3.49□□□□□ -1.85
SNHG1-215ENST00000540904 KRTAP19-7Q3SYF9 63 aa3.46□□□□□ -1.86
SNHG1-215ENST00000540904 K7ERS5 55 aa3.45□□□□□ -1.86
SNHG1-215ENST00000540904 C10orf95Q9H7T3 257 aa3.45□□□□□ -1.86
SNHG1-215ENST00000540904 TNP1P09430 55 aa3.43□□□□□ -1.86
SNHG1-215ENST00000540904 MT1EP04732 61 aa3.42□□□□□ -1.86
SNHG1-215ENST00000540904 KRTAP19-5Q3LI72 72 aa3.41□□□□□ -1.86
SNHG1-215ENST00000540904 KTN1-AS1Q86SY8 53 aa3.4□□□□□ -1.87
SNHG1-215ENST00000540904 KRTAP2-2Q9BYT5 123 aa3.4□□□□□ -1.87
SNHG1-215ENST00000540904 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.87
SNHG1-215ENST00000540904 LCE3AQ5TA76 89 aa3.38□□□□□ -1.87
SNHG1-215ENST00000540904 KRTAP19-3Q7Z4W3 81 aa3.38□□□□□ -1.87
SNHG1-215ENST00000540904 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
SNHG1-215ENST00000540904 MT1GP13640 62 aa3.3□□□□□ -1.88
SNHG1-215ENST00000540904 PP632Q6XCG6 107 aa3.29□□□□□ -1.88
SNHG1-215ENST00000540904 MT1LQ93083 61 aa3.29□□□□□ -1.88
SNHG1-215ENST00000540904 KRTAP25-1Q3LHN0 102 aa3.28□□□□□ -1.88
SNHG1-215ENST00000540904 ROMO1P60602 79 aa3.26□□□□□ -1.89
SNHG1-215ENST00000540904 KRTAP12-3P60328 96 aa3.25□□□□□ -1.89
SNHG1-215ENST00000540904 MT1MQ8N339 61 aa3.25□□□□□ -1.89
SNHG1-215ENST00000540904 PRAC1Q96KF2 57 aa3.21□□□□□ -1.9
SNHG1-215ENST00000540904 DSTQ03001 7570 aaKnown RBP3.2□□□□□ -1.9
SNHG1-215ENST00000540904 KRTAP4-3Q9BYR4 195 aa3.19□□□□□ -1.9
SNHG1-215ENST00000540904 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.91
SNHG1-215ENST00000540904 MT3P25713 68 aa3.06□□□□□ -1.92
SNHG1-215ENST00000540904 MT4P47944 62 aa3.06□□□□□ -1.92
SNHG1-215ENST00000540904 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
SNHG1-215ENST00000540904 KRTAP4-4Q9BYR3 166 aa3.04□□□□□ -1.92
SNHG1-215ENST00000540904 LCE3CQ5T5A8 94 aa3□□□□□ -1.93
SNHG1-215ENST00000540904 KRTAP5-5Q701N2 237 aaPredicted RBP2.96□□□□□ -1.94
SNHG1-215ENST00000540904 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
SNHG1-215ENST00000540904 KRTAP9-6A8MVA2 160 aa2.89□□□□□ -1.95
SNHG1-215ENST00000540904 KRTAP12-4P60329 112 aa2.88□□□□□ -1.95
SNHG1-215ENST00000540904 KRTAP20-2Q3LI61 65 aa2.86□□□□□ -1.95
SNHG1-215ENST00000540904 SPRR5A0A1B0GTR4 108 aa2.85□□□□□ -1.95
SNHG1-215ENST00000540904 GPR98Q8WXG9 6306 aa2.81□□□□□ -1.96
SNHG1-215ENST00000540904 MT1AP04731 61 aa2.79□□□□□ -1.96
SNHG1-215ENST00000540904 KRTAP6-1Q3LI64 71 aa2.78□□□□□ -1.96
SNHG1-215ENST00000540904 KRTAP5-10Q6L8G5 202 aa2.78□□□□□ -1.96
SNHG1-215ENST00000540904 OBSCNQ5VST9 7968 aa2.77□□□□□ -1.97
SNHG1-215ENST00000540904 AHNAK2Q8IVF2 5795 aa2.75□□□□□ -1.97
SNHG1-215ENST00000540904 SYNE1Q8NF91 8797 aaKnown RBP2.72□□□□□ -1.97
SNHG1-215ENST00000540904 LUZP6Q538Z0 58 aa2.71□□□□□ -1.98
SNHG1-215ENST00000540904 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
SNHG1-215ENST00000540904 NDUFAF8A1L188 74 aa2.66□□□□□ -1.98
SNHG1-215ENST00000540904 LCE1FQ5T754 118 aa2.66□□□□□ -1.98
SNHG1-215ENST00000540904 KRTAP5-7Q6L8G8 165 aa2.65□□□□□ -1.99
SNHG1-215ENST00000540904 KRTAP6-2Q3LI66 62 aa2.64□□□□□ -1.99
SNHG1-215ENST00000540904 KRTAP5-8O75690 187 aa2.49□□□□□ -2.01
SNHG1-215ENST00000540904 LCE3EQ5T5B0 92 aa2.34□□□□□ -2.03
SNHG1-215ENST00000540904 MUC5ACP98088 5654 aa2.26□□□□□ -2.05
SNHG1-215ENST00000540904 INE1O15225 51 aa2.25□□□□□ -2.05
SNHG1-215ENST00000540904 MUC5BQ9HC84 5762 aaPredicted RBP2.24□□□□□ -2.05
SNHG1-215ENST00000540904 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
SNHG1-215ENST00000540904 AHNAKQ09666 5890 aaKnown RBP2.19□□□□□ -2.06
SNHG1-215ENST00000540904 LCE3DQ9BYE3 92 aa2.19□□□□□ -2.06
SNHG1-215ENST00000540904 LCE1CQ5T751 118 aa2.17□□□□□ -2.06
SNHG1-215ENST00000540904 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
SNHG1-215ENST00000540904 MUC19Q7Z5P9 8384 aa1.8□□□□□ -2.12
SNHG1-215ENST00000540904 PRM1P04553 51 aa1.68□□□□□ -2.14
SNHG1-215ENST00000540904 PHGR1C9JFL3 82 aa1.67□□□□□ -2.14
SNHG1-215ENST00000540904 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
SNHG1-215ENST00000540904 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 8.3 ms