RNA–Protein interactions for RNA: ENST00000538363.1

TNFRSF1A-211, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 554 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-211ENST00000538363 KRTAP6-3Q3LI67 103 aa4.29□□□□□ -1.72
TNFRSF1A-211ENST00000538363 SYNE2Q8WXH0 6885 aaKnown RBP4.27□□□□□ -1.73
TNFRSF1A-211ENST00000538363 A0A0A0MQY5 61 aa4.24□□□□□ -1.73
TNFRSF1A-211ENST00000538363 KRTAP2-2Q9BYT5 123 aa4.24□□□□□ -1.73
TNFRSF1A-211ENST00000538363 KRTAP10-7P60409 375 aaPredicted RBP4.23□□□□□ -1.73
TNFRSF1A-211ENST00000538363 KRTAP10-12P60413 245 aa4.22□□□□□ -1.73
TNFRSF1A-211ENST00000538363 KTN1-AS1Q86SY8 53 aa4.16□□□□□ -1.74
TNFRSF1A-211ENST00000538363 PP632Q6XCG6 107 aa4.14□□□□□ -1.75
TNFRSF1A-211ENST00000538363 KRTAP8-1Q8IUC2 63 aa4.13□□□□□ -1.75
TNFRSF1A-211ENST00000538363 LCE3AQ5TA76 89 aa4.12□□□□□ -1.75
TNFRSF1A-211ENST00000538363 PRAC1Q96KF2 57 aa4.12□□□□□ -1.75
TNFRSF1A-211ENST00000538363 MT3P25713 68 aa4.07□□□□□ -1.76
TNFRSF1A-211ENST00000538363 KMT2DO14686 5537 aa4.03□□□□□ -1.76
TNFRSF1A-211ENST00000538363 KRTAP5-9P26371 169 aa4.03□□□□□ -1.76
TNFRSF1A-211ENST00000538363 NEBP20929 6669 aa4.02□□□□□ -1.77
TNFRSF1A-211ENST00000538363 MUC12Q9UKN1 5478 aa4□□□□□ -1.77
TNFRSF1A-211ENST00000538363 KRTAP12-3P60328 96 aa3.99□□□□□ -1.77
TNFRSF1A-211ENST00000538363 KRTAP20-1Q3LI63 56 aa3.99□□□□□ -1.77
TNFRSF1A-211ENST00000538363 KRTAP19-5Q3LI72 72 aa3.99□□□□□ -1.77
TNFRSF1A-211ENST00000538363 SPRR2FQ96RM1 72 aa3.99□□□□□ -1.77
TNFRSF1A-211ENST00000538363 MDN1Q9NU22 5596 aa3.91□□□□□ -1.78
TNFRSF1A-211ENST00000538363 KRTAP2-3P0C7H8 128 aa3.9□□□□□ -1.79
TNFRSF1A-211ENST00000538363 KRTAP19-7Q3SYF9 63 aa3.9□□□□□ -1.79
TNFRSF1A-211ENST00000538363 KRTAP2-4Q9BYR9 128 aa3.9□□□□□ -1.79
TNFRSF1A-211ENST00000538363 KRTAP5-11Q6L8G4 156 aa3.89□□□□□ -1.79
TNFRSF1A-211ENST00000538363 MT1EP04732 61 aa3.87□□□□□ -1.79
TNFRSF1A-211ENST00000538363 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
TNFRSF1A-211ENST00000538363 SPRR2EP22531 72 aa3.84□□□□□ -1.79
TNFRSF1A-211ENST00000538363 SPRR2BP35325 72 aa3.84□□□□□ -1.79
TNFRSF1A-211ENST00000538363 SPRR2AP35326 72 aa3.84□□□□□ -1.79
TNFRSF1A-211ENST00000538363 KRTAP19-3Q7Z4W3 81 aa3.78□□□□□ -1.8
TNFRSF1A-211ENST00000538363 MT1LQ93083 61 aa3.78□□□□□ -1.8
TNFRSF1A-211ENST00000538363 KRTAP2-1Q9BYU5 128 aa3.78□□□□□ -1.8
TNFRSF1A-211ENST00000538363 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
TNFRSF1A-211ENST00000538363 MT1GP13640 62 aa3.76□□□□□ -1.81
TNFRSF1A-211ENST00000538363 SPRR2DP22532 72 aa3.72□□□□□ -1.81
TNFRSF1A-211ENST00000538363 LCE3CQ5T5A8 94 aa3.7□□□□□ -1.82
TNFRSF1A-211ENST00000538363 LCE1FQ5T754 118 aa3.68□□□□□ -1.82
TNFRSF1A-211ENST00000538363 MT1MQ8N339 61 aa3.68□□□□□ -1.82
TNFRSF1A-211ENST00000538363 KRTAP4-3Q9BYR4 195 aa3.58□□□□□ -1.84
TNFRSF1A-211ENST00000538363 LUZP6Q538Z0 58 aa3.54□□□□□ -1.84
TNFRSF1A-211ENST00000538363 NDUFAF8A1L188 74 aa3.51□□□□□ -1.85
TNFRSF1A-211ENST00000538363 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
TNFRSF1A-211ENST00000538363 SPRR5A0A1B0GTR4 108 aa3.45□□□□□ -1.86
TNFRSF1A-211ENST00000538363 KRTAP9-6A8MVA2 160 aa3.44□□□□□ -1.86
TNFRSF1A-211ENST00000538363 GPR98Q8WXG9 6306 aa3.33□□□□□ -1.88
TNFRSF1A-211ENST00000538363 KRTAP5-1Q6L8H4 278 aa3.32□□□□□ -1.88
TNFRSF1A-211ENST00000538363 MT1AP04731 61 aa3.24□□□□□ -1.89
TNFRSF1A-211ENST00000538363 MT4P47944 62 aa3.24□□□□□ -1.89
TNFRSF1A-211ENST00000538363 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
TNFRSF1A-211ENST00000538363 KRTAP12-4P60329 112 aa3.23□□□□□ -1.89
TNFRSF1A-211ENST00000538363 HMCN1Q96RW7 5635 aa3.21□□□□□ -1.89
TNFRSF1A-211ENST00000538363 KRTAP5-4Q6L8H1 288 aa3.21□□□□□ -1.9
TNFRSF1A-211ENST00000538363 KRTAP6-1Q3LI64 71 aa3.18□□□□□ -1.9
TNFRSF1A-211ENST00000538363 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
TNFRSF1A-211ENST00000538363 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
TNFRSF1A-211ENST00000538363 KRTAP5-10Q6L8G5 202 aa3.1□□□□□ -1.91
TNFRSF1A-211ENST00000538363 AHNAK2Q8IVF2 5795 aa3.08□□□□□ -1.92
TNFRSF1A-211ENST00000538363 SYNE1Q8NF91 8797 aaKnown RBP3.08□□□□□ -1.92
TNFRSF1A-211ENST00000538363 KRTAP20-2Q3LI61 65 aa3.05□□□□□ -1.92
TNFRSF1A-211ENST00000538363 OBSCNQ5VST9 7968 aa3.04□□□□□ -1.92
TNFRSF1A-211ENST00000538363 KRTAP5-7Q6L8G8 165 aa3.02□□□□□ -1.93
TNFRSF1A-211ENST00000538363 KRTAP6-2Q3LI66 62 aa2.98□□□□□ -1.93
TNFRSF1A-211ENST00000538363 KRTAP5-2Q701N4 177 aa2.88□□□□□ -1.95
TNFRSF1A-211ENST00000538363 LCE3DQ9BYE3 92 aa2.79□□□□□ -1.96
TNFRSF1A-211ENST00000538363 INE1O15225 51 aa2.69□□□□□ -1.98
TNFRSF1A-211ENST00000538363 KRTAP5-8O75690 187 aa2.68□□□□□ -1.98
TNFRSF1A-211ENST00000538363 MUC5BQ9HC84 5762 aaPredicted RBP2.59□□□□□ -2
TNFRSF1A-211ENST00000538363 MUC5ACP98088 5654 aa2.56□□□□□ -2
TNFRSF1A-211ENST00000538363 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
TNFRSF1A-211ENST00000538363 LCE1CQ5T751 118 aa2.55□□□□□ -2
TNFRSF1A-211ENST00000538363 LCE1BQ5T7P3 118 aa2.55□□□□□ -2
TNFRSF1A-211ENST00000538363 PRM1P04553 51 aa2.28□□□□□ -2.04
TNFRSF1A-211ENST00000538363 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
TNFRSF1A-211ENST00000538363 KRTAP21-2Q3LI59 83 aa2.05□□□□□ -2.08
TNFRSF1A-211ENST00000538363 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
TNFRSF1A-211ENST00000538363 KRTAP21-1Q3LI58 79 aa1.43□□□□□ -2.18
TNFRSF1A-211ENST00000538363 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 34.3 ms