RNA–Protein interactions for RNA: ENST00000538253.5

PTPN22-211, Transcript of protein tyrosine phosphatase, non-receptor type 22, humanhuman

TSL 1 (best) BASIC

Gene PTPN22, Length 3,575 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22-211ENST00000538253 SYNE2Q8WXH0 6885 aaKnown RBP1.62□□□□□ -2.15
PTPN22-211ENST00000538253 KRTAP5-1Q6L8H4 278 aa1.62□□□□□ -2.15
PTPN22-211ENST00000538253 MT1FP04733 61 aa1.61□□□□□ -2.15
PTPN22-211ENST00000538253 KRTAP19-8Q3LI54 63 aa1.61□□□□□ -2.15
PTPN22-211ENST00000538253 A0A0D9SG42 100 aa1.6□□□□□ -2.15
PTPN22-211ENST00000538253 FLGP20930 4061 aaPredicted RBP1.6□□□□□ -2.15
PTPN22-211ENST00000538253 KRTAP12-2P59991 146 aa1.58□□□□□ -2.16
PTPN22-211ENST00000538253 KRTAP13-4Q3LI77 160 aa1.58□□□□□ -2.16
PTPN22-211ENST00000538253 LCE1EQ5T753 118 aa1.58□□□□□ -2.16
PTPN22-211ENST00000538253 LPAP08519 4548 aa1.57□□□□□ -2.16
PTPN22-211ENST00000538253 KRTAP19-6Q3LI70 58 aa1.57□□□□□ -2.16
PTPN22-211ENST00000538253 KRTAP10-7P60409 375 aaPredicted RBP1.57□□□□□ -2.16
PTPN22-211ENST00000538253 KRTAP6-3Q3LI67 103 aa1.55□□□□□ -2.16
PTPN22-211ENST00000538253 TNP1P09430 55 aa1.54□□□□□ -2.16
PTPN22-211ENST00000538253 KRTAP10-5P60370 271 aa1.54□□□□□ -2.16
PTPN22-211ENST00000538253 KRTAP2-3P0C7H8 128 aa1.52□□□□□ -2.17
PTPN22-211ENST00000538253 KRTAP2-4Q9BYR9 128 aa1.52□□□□□ -2.17
PTPN22-211ENST00000538253 KRTAP12-1P59990 96 aa1.52□□□□□ -2.17
PTPN22-211ENST00000538253 PP632Q6XCG6 107 aa1.51□□□□□ -2.17
PTPN22-211ENST00000538253 SPRR5A0A1B0GTR4 108 aa1.51□□□□□ -2.17
PTPN22-211ENST00000538253 MT1BP07438 61 aa1.51□□□□□ -2.17
PTPN22-211ENST00000538253 MACF1Q9UPN3 7388 aaKnown RBP1.48□□□□□ -2.17
PTPN22-211ENST00000538253 KRTAP8-1Q8IUC2 63 aa1.45□□□□□ -2.18
PTPN22-211ENST00000538253 USH2AO75445 5202 aa1.44□□□□□ -2.18
PTPN22-211ENST00000538253 KRTAP10-12P60413 245 aa1.44□□□□□ -2.18
PTPN22-211ENST00000538253 MT1XP80297 61 aa1.44□□□□□ -2.18
PTPN22-211ENST00000538253 KRTAP2-2Q9BYT5 123 aa1.43□□□□□ -2.18
PTPN22-211ENST00000538253 KRTAP2-1Q9BYU5 128 aa1.43□□□□□ -2.18
PTPN22-211ENST00000538253 KMT2DO14686 5537 aa1.42□□□□□ -2.18
PTPN22-211ENST00000538253 KRTAP4-3Q9BYR4 195 aa1.41□□□□□ -2.18
PTPN22-211ENST00000538253 FCGBPQ9Y6R7 5405 aaPredicted RBP1.4□□□□□ -2.19
PTPN22-211ENST00000538253 LCE1AQ5T7P2 110 aa1.39□□□□□ -2.19
PTPN22-211ENST00000538253 AHNAK2Q8IVF2 5795 aa1.39□□□□□ -2.19
PTPN22-211ENST00000538253 SPRR2FQ96RM1 72 aa1.38□□□□□ -2.19
PTPN22-211ENST00000538253 SPRR2EP22531 72 aa1.36□□□□□ -2.19
PTPN22-211ENST00000538253 SPRR2BP35325 72 aa1.36□□□□□ -2.19
PTPN22-211ENST00000538253 SPRR2AP35326 72 aa1.36□□□□□ -2.19
PTPN22-211ENST00000538253 KRTAP5-7Q6L8G8 165 aa1.35□□□□□ -2.19
PTPN22-211ENST00000538253 MT1GP13640 62 aa1.34□□□□□ -2.2
PTPN22-211ENST00000538253 KRTAP12-3P60328 96 aa1.34□□□□□ -2.2
PTPN22-211ENST00000538253 AHNAKQ09666 5890 aaKnown RBP1.33□□□□□ -2.2
PTPN22-211ENST00000538253 SPRR2DP22532 72 aa1.33□□□□□ -2.2
PTPN22-211ENST00000538253 LCE3AQ5TA76 89 aa1.32□□□□□ -2.2
PTPN22-211ENST00000538253 KRTAP19-3Q7Z4W3 81 aa1.31□□□□□ -2.2
PTPN22-211ENST00000538253 MT1EP04732 61 aa1.3□□□□□ -2.2
PTPN22-211ENST00000538253 KRTAP19-5Q3LI72 72 aa1.29□□□□□ -2.2
PTPN22-211ENST00000538253 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
PTPN22-211ENST00000538253 MUC12Q9UKN1 5478 aa1.27□□□□□ -2.21
PTPN22-211ENST00000538253 KRTAP19-7Q3SYF9 63 aa1.27□□□□□ -2.21
PTPN22-211ENST00000538253 KRTAP5-5Q701N2 237 aaPredicted RBP1.26□□□□□ -2.21
PTPN22-211ENST00000538253 MT1LQ93083 61 aa1.26□□□□□ -2.21
PTPN22-211ENST00000538253 MDN1Q9NU22 5596 aa1.24□□□□□ -2.21
PTPN22-211ENST00000538253 LCE1FQ5T754 118 aa1.24□□□□□ -2.21
PTPN22-211ENST00000538253 MT1MQ8N339 61 aa1.24□□□□□ -2.21
PTPN22-211ENST00000538253 DSTQ03001 7570 aaKnown RBP1.22□□□□□ -2.21
PTPN22-211ENST00000538253 LCE3CQ5T5A8 94 aa1.22□□□□□ -2.21
PTPN22-211ENST00000538253 KRTAP12-4P60329 112 aa1.2□□□□□ -2.22
PTPN22-211ENST00000538253 MT3P25713 68 aa1.17□□□□□ -2.22
PTPN22-211ENST00000538253 MUC5ACP98088 5654 aa1.16□□□□□ -2.22
PTPN22-211ENST00000538253 MT1AP04731 61 aa1.13□□□□□ -2.23
PTPN22-211ENST00000538253 LCE3EQ5T5B0 92 aa1.08□□□□□ -2.24
PTPN22-211ENST00000538253 MT4P47944 62 aa1.08□□□□□ -2.24
PTPN22-211ENST00000538253 KRTAP9-6A8MVA2 160 aa1.06□□□□□ -2.24
PTPN22-211ENST00000538253 KRTAP20-2Q3LI61 65 aa1.05□□□□□ -2.24
PTPN22-211ENST00000538253 LCE3DQ9BYE3 92 aa1.03□□□□□ -2.24
PTPN22-211ENST00000538253 PRM1P04553 51 aa1.01□□□□□ -2.25
PTPN22-211ENST00000538253 KRTAP6-1Q3LI64 71 aa1.01□□□□□ -2.25
PTPN22-211ENST00000538253 KRTAP6-2Q3LI66 62 aa0.97□□□□□ -2.25
PTPN22-211ENST00000538253 SYNE1Q8NF91 8797 aaKnown RBP0.96□□□□□ -2.26
PTPN22-211ENST00000538253 LCE1CQ5T751 118 aa0.94□□□□□ -2.26
PTPN22-211ENST00000538253 LCE1BQ5T7P3 118 aa0.94□□□□□ -2.26
PTPN22-211ENST00000538253 OBSCNQ5VST9 7968 aa0.93□□□□□ -2.26
PTPN22-211ENST00000538253 MUC19Q7Z5P9 8384 aa0.88□□□□□ -2.27
PTPN22-211ENST00000538253 PHGR1C9JFL3 82 aa0.82□□□□□ -2.28
PTPN22-211ENST00000538253 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
PTPN22-211ENST00000538253 KRTAP21-2Q3LI59 83 aa0.66□□□□□ -2.3
PTPN22-211ENST00000538253 MUC16Q8WXI7 14507 aa0.61□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 78.7 ms