RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ADM2Q7Z4H4 148 aa3.71□□□□□ -1.82
USP28-205ENST00000537706 KRTAP13-4Q3LI77 160 aa3.69□□□□□ -1.82
USP28-205ENST00000537706 K7ERS5 55 aa3.67□□□□□ -1.82
USP28-205ENST00000537706 KRTAP5-3Q6L8H2 238 aa3.67□□□□□ -1.82
USP28-205ENST00000537706 M0QZ58 72 aa3.64□□□□□ -1.83
USP28-205ENST00000537706 A0A0D9SG42 100 aa3.62□□□□□ -1.83
USP28-205ENST00000537706 KRTAP10-12P60413 245 aa3.6□□□□□ -1.83
USP28-205ENST00000537706 KRTAP10-7P60409 375 aaPredicted RBP3.59□□□□□ -1.83
USP28-205ENST00000537706 LCE5AQ5TCM9 118 aa3.59□□□□□ -1.83
USP28-205ENST00000537706 PRAC1Q96KF2 57 aa3.59□□□□□ -1.83
USP28-205ENST00000537706 KRTAP12-1P59990 96 aa3.56□□□□□ -1.84
USP28-205ENST00000537706 R4GN34 69 aa3.56□□□□□ -1.84
USP28-205ENST00000537706 ROMO1P60602 79 aa3.54□□□□□ -1.84
USP28-205ENST00000537706 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
USP28-205ENST00000537706 SPINT4Q6UDR6 99 aa3.52□□□□□ -1.85
USP28-205ENST00000537706 LINC01554Q52M75 96 aa3.49□□□□□ -1.85
USP28-205ENST00000537706 H3BS24 57 aa3.48□□□□□ -1.85
USP28-205ENST00000537706 KRTAP25-1Q3LHN0 102 aa3.48□□□□□ -1.85
USP28-205ENST00000537706 KRTAP5-4Q6L8H1 288 aa3.46□□□□□ -1.85
USP28-205ENST00000537706 AHNAKQ09666 5890 aaKnown RBP3.45□□□□□ -1.86
USP28-205ENST00000537706 KRTAP4-7Q9BYR0 210 aa3.45□□□□□ -1.86
USP28-205ENST00000537706 PP632Q6XCG6 107 aa3.44□□□□□ -1.86
USP28-205ENST00000537706 MT1EP04732 61 aa3.4□□□□□ -1.86
USP28-205ENST00000537706 MT1GP13640 62 aa3.4□□□□□ -1.87
USP28-205ENST00000537706 MUC5BQ9HC84 5762 aaPredicted RBP3.37□□□□□ -1.87
USP28-205ENST00000537706 KRTAP19-7Q3SYF9 63 aa3.36□□□□□ -1.87
USP28-205ENST00000537706 CAMK2N1Q7Z7J9 78 aa3.36□□□□□ -1.87
USP28-205ENST00000537706 C10orf95Q9H7T3 257 aa3.36□□□□□ -1.87
USP28-205ENST00000537706 KRTAP20-2Q3LI61 65 aa3.33□□□□□ -1.88
USP28-205ENST00000537706 A0A0A0MQY5 61 aa3.31□□□□□ -1.88
USP28-205ENST00000537706 MT1MQ8N339 61 aa3.29□□□□□ -1.88
USP28-205ENST00000537706 KRTAP4-2Q9BYR5 136 aa3.25□□□□□ -1.89
USP28-205ENST00000537706 MUC5ACP98088 5654 aa3.24□□□□□ -1.89
USP28-205ENST00000537706 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
USP28-205ENST00000537706 KRTAP9-4Q9BYQ2 154 aa3.24□□□□□ -1.89
USP28-205ENST00000537706 KRTAP12-4P60329 112 aa3.23□□□□□ -1.89
USP28-205ENST00000537706 TNP1P09430 55 aa3.23□□□□□ -1.89
USP28-205ENST00000537706 KRTAP23-1A1A580 65 aa3.2□□□□□ -1.9
USP28-205ENST00000537706 KRTAP4-11Q9BYQ6 195 aa3.2□□□□□ -1.9
USP28-205ENST00000537706 KRTAP4-3Q9BYR4 195 aa3.18□□□□□ -1.9
USP28-205ENST00000537706 KRTAP19-5Q3LI72 72 aa3.17□□□□□ -1.9
USP28-205ENST00000537706 MT1LQ93083 61 aa3.16□□□□□ -1.9
USP28-205ENST00000537706 KRTAP5-8O75690 187 aa3.13□□□□□ -1.91
USP28-205ENST00000537706 KRTAP15-1Q3LI76 137 aa3.12□□□□□ -1.91
USP28-205ENST00000537706 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.91
USP28-205ENST00000537706 LCE3AQ5TA76 89 aa3.06□□□□□ -1.92
USP28-205ENST00000537706 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
USP28-205ENST00000537706 SYNE1Q8NF91 8797 aaKnown RBP2.94□□□□□ -1.94
USP28-205ENST00000537706 NDUFAF8A1L188 74 aa2.94□□□□□ -1.94
USP28-205ENST00000537706 KRTAP12-3P60328 96 aa2.94□□□□□ -1.94
USP28-205ENST00000537706 KRTAP5-2Q701N4 177 aa2.93□□□□□ -1.94
USP28-205ENST00000537706 LUZP6Q538Z0 58 aa2.9□□□□□ -1.95
USP28-205ENST00000537706 KRTAP19-4Q3LI73 84 aa2.82□□□□□ -1.96
USP28-205ENST00000537706 LCE3CQ5T5A8 94 aa2.76□□□□□ -1.97
USP28-205ENST00000537706 KRTAP5-1Q6L8H4 278 aa2.72□□□□□ -1.97
USP28-205ENST00000537706 MT1AP04731 61 aa2.7□□□□□ -1.98
USP28-205ENST00000537706 KRTAP6-2Q3LI66 62 aa2.7□□□□□ -1.98
USP28-205ENST00000537706 KRTAP6-1Q3LI64 71 aa2.68□□□□□ -1.98
USP28-205ENST00000537706 OBSCNQ5VST9 7968 aa2.66□□□□□ -1.98
USP28-205ENST00000537706 KRTAP9-6A8MVA2 160 aa2.61□□□□□ -1.99
USP28-205ENST00000537706 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.56□□□□□ -2
USP28-205ENST00000537706 MT3P25713 68 aa2.54□□□□□ -2
USP28-205ENST00000537706 INE1O15225 51 aa2.44□□□□□ -2.02
USP28-205ENST00000537706 LCE1EQ5T753 118 aa2.44□□□□□ -2.02
USP28-205ENST00000537706 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
USP28-205ENST00000537706 PHGR1C9JFL3 82 aa2.32□□□□□ -2.04
USP28-205ENST00000537706 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
USP28-205ENST00000537706 LCE1FQ5T754 118 aa2.23□□□□□ -2.05
USP28-205ENST00000537706 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
USP28-205ENST00000537706 LCE3DQ9BYE3 92 aa2.09□□□□□ -2.08
USP28-205ENST00000537706 LCE3EQ5T5B0 92 aa2.05□□□□□ -2.08
USP28-205ENST00000537706 KRTAP4-4Q9BYR3 166 aa2.03□□□□□ -2.08
USP28-205ENST00000537706 PRM1P04553 51 aa1.86□□□□□ -2.11
USP28-205ENST00000537706 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
USP28-205ENST00000537706 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
USP28-205ENST00000537706 MUC19Q7Z5P9 8384 aa1.7□□□□□ -2.14
USP28-205ENST00000537706 MUC16Q8WXI7 14507 aa1.3□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 84.7 ms