RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 KRTAP19-5Q3LI72 72 aa5.07□□□□□ -1.6
SYNE1-235ENST00000537033 PP632Q6XCG6 107 aa5.07□□□□□ -1.6
SYNE1-235ENST00000537033 MT1GP13640 62 aa5.06□□□□□ -1.6
SYNE1-235ENST00000537033 KRTAP12-1P59990 96 aa5.05□□□□□ -1.6
SYNE1-235ENST00000537033 DSTQ03001 7570 aaKnown RBP5.02□□□□□ -1.61
SYNE1-235ENST00000537033 LCE1DQ5T752 114 aa4.98□□□□□ -1.61
SYNE1-235ENST00000537033 GPR98Q8WXG9 6306 aa4.97□□□□□ -1.61
SYNE1-235ENST00000537033 LCE4AQ5TA78 99 aa4.96□□□□□ -1.62
SYNE1-235ENST00000537033 MT1MQ8N339 61 aa4.96□□□□□ -1.62
SYNE1-235ENST00000537033 MT1LQ93083 61 aa4.94□□□□□ -1.62
SYNE1-235ENST00000537033 K7ERS5 55 aa4.93□□□□□ -1.62
SYNE1-235ENST00000537033 MT4P47944 62 aa4.92□□□□□ -1.62
SYNE1-235ENST00000537033 PMAIP1Q13794 54 aa4.91□□□□□ -1.62
SYNE1-235ENST00000537033 TNP1P09430 55 aa4.9□□□□□ -1.63
SYNE1-235ENST00000537033 C10orf95Q9H7T3 257 aa4.89□□□□□ -1.63
SYNE1-235ENST00000537033 LCE3AQ5TA76 89 aa4.88□□□□□ -1.63
SYNE1-235ENST00000537033 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
SYNE1-235ENST00000537033 KRTAP5-4Q6L8H1 288 aa4.8□□□□□ -1.64
SYNE1-235ENST00000537033 HMCN1Q96RW7 5635 aa4.8□□□□□ -1.64
SYNE1-235ENST00000537033 KTN1-AS1Q86SY8 53 aa4.74□□□□□ -1.65
SYNE1-235ENST00000537033 SVIPQ8NHG7 77 aa4.73□□□□□ -1.65
SYNE1-235ENST00000537033 KRTAP4-6Q9BYQ5 205 aa4.73□□□□□ -1.65
SYNE1-235ENST00000537033 KRTAP12-3P60328 96 aa4.71□□□□□ -1.66
SYNE1-235ENST00000537033 ROMO1P60602 79 aa4.7□□□□□ -1.66
SYNE1-235ENST00000537033 KRTAP5-10Q6L8G5 202 aa4.69□□□□□ -1.66
SYNE1-235ENST00000537033 KRTAP4-7Q9BYR0 210 aa4.66□□□□□ -1.66
SYNE1-235ENST00000537033 AHNAK2Q8IVF2 5795 aa4.65□□□□□ -1.67
SYNE1-235ENST00000537033 PRAC1Q96KF2 57 aa4.58□□□□□ -1.68
SYNE1-235ENST00000537033 KRTAP20-2Q3LI61 65 aa4.56□□□□□ -1.68
SYNE1-235ENST00000537033 KRTAP5-3Q6L8H2 238 aa4.56□□□□□ -1.68
SYNE1-235ENST00000537033 KRTAP25-1Q3LHN0 102 aa4.54□□□□□ -1.68
SYNE1-235ENST00000537033 KRTAP5-7Q6L8G8 165 aa4.54□□□□□ -1.68
SYNE1-235ENST00000537033 KRTAP5-5Q701N2 237 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-235ENST00000537033 SPRR5A0A1B0GTR4 108 aa4.53□□□□□ -1.68
SYNE1-235ENST00000537033 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
SYNE1-235ENST00000537033 KRTAP19-4Q3LI73 84 aa4.45□□□□□ -1.7
SYNE1-235ENST00000537033 LOC100996750A0A140TA64 210 aa4.43□□□□□ -1.7
SYNE1-235ENST00000537033 KRTAP23-1A1A580 65 aa4.35□□□□□ -1.71
SYNE1-235ENST00000537033 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
SYNE1-235ENST00000537033 LCE3CQ5T5A8 94 aa4.31□□□□□ -1.72
SYNE1-235ENST00000537033 SYNE1Q8NF91 8797 aaKnown RBP4.26□□□□□ -1.73
SYNE1-235ENST00000537033 MT1AP04731 61 aa4.21□□□□□ -1.74
SYNE1-235ENST00000537033 KRTAP4-11Q9BYQ6 195 aa4.2□□□□□ -1.74
SYNE1-235ENST00000537033 KRTAP6-1Q3LI64 71 aa4.18□□□□□ -1.74
SYNE1-235ENST00000537033 KRTAP5-2Q701N4 177 aa4.18□□□□□ -1.74
SYNE1-235ENST00000537033 KRTAP9-4Q9BYQ2 154 aa4.07□□□□□ -1.76
SYNE1-235ENST00000537033 KRTAP5-8O75690 187 aa4.04□□□□□ -1.76
SYNE1-235ENST00000537033 KRTAP6-2Q3LI66 62 aa4.03□□□□□ -1.76
SYNE1-235ENST00000537033 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
SYNE1-235ENST00000537033 KRTAP9-9Q9BYP9 154 aa3.91□□□□□ -1.78
SYNE1-235ENST00000537033 MUC5ACP98088 5654 aa3.89□□□□□ -1.79
SYNE1-235ENST00000537033 MT3P25713 68 aa3.87□□□□□ -1.79
SYNE1-235ENST00000537033 AHNAKQ09666 5890 aaKnown RBP3.83□□□□□ -1.8
SYNE1-235ENST00000537033 MUC5BQ9HC84 5762 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-235ENST00000537033 LUZP6Q538Z0 58 aa3.77□□□□□ -1.81
SYNE1-235ENST00000537033 OBSCNQ5VST9 7968 aa3.77□□□□□ -1.81
SYNE1-235ENST00000537033 KRTAP5-1Q6L8H4 278 aa3.76□□□□□ -1.81
SYNE1-235ENST00000537033 H3BS24 57 aa3.75□□□□□ -1.81
SYNE1-235ENST00000537033 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
SYNE1-235ENST00000537033 LCE1EQ5T753 118 aa3.58□□□□□ -1.84
SYNE1-235ENST00000537033 A0A0A0MQY5 61 aa3.56□□□□□ -1.84
SYNE1-235ENST00000537033 LCE1BQ5T7P3 118 aa3.4□□□□□ -1.87
SYNE1-235ENST00000537033 KRTAP4-2Q9BYR5 136 aa3.37□□□□□ -1.87
SYNE1-235ENST00000537033 LCE1CQ5T751 118 aa3.32□□□□□ -1.88
SYNE1-235ENST00000537033 KRTAP4-12Q9BQ66 201 aa3.12□□□□□ -1.91
SYNE1-235ENST00000537033 LCE3DQ9BYE3 92 aa3.09□□□□□ -1.91
SYNE1-235ENST00000537033 INE1O15225 51 aa3.06□□□□□ -1.92
SYNE1-235ENST00000537033 KRTAP5-11Q6L8G4 156 aa3.03□□□□□ -1.92
SYNE1-235ENST00000537033 LCE1FQ5T754 118 aa2.99□□□□□ -1.93
SYNE1-235ENST00000537033 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.99□□□□□ -1.93
SYNE1-235ENST00000537033 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
SYNE1-235ENST00000537033 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
SYNE1-235ENST00000537033 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
SYNE1-235ENST00000537033 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
SYNE1-235ENST00000537033 PRM1P04553 51 aa2.45□□□□□ -2.02
SYNE1-235ENST00000537033 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.03
SYNE1-235ENST00000537033 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
SYNE1-235ENST00000537033 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 46.8 ms