RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 KRTAP2-1Q9BYU5 128 aa8.26□□□□□ -1.09
SFSWAP-204ENST00000535399 LCE3BQ5TA77 95 aa8.23□□□□□ -1.09
SFSWAP-204ENST00000535399 KRTAP25-1Q3LHN0 102 aa8.15□□□□□ -1.1
SFSWAP-204ENST00000535399 MT1GP13640 62 aa8.13□□□□□ -1.11
SFSWAP-204ENST00000535399 MT1LQ93083 61 aa8.12□□□□□ -1.11
SFSWAP-204ENST00000535399 KRTAP12-3P60328 96 aa8.03□□□□□ -1.12
SFSWAP-204ENST00000535399 PP632Q6XCG6 107 aa8.03□□□□□ -1.12
SFSWAP-204ENST00000535399 DSTQ03001 7570 aaKnown RBP8.01□□□□□ -1.13
SFSWAP-204ENST00000535399 MT1MQ8N339 61 aa8.01□□□□□ -1.13
SFSWAP-204ENST00000535399 CDC42SE1Q9NRR8 79 aa7.98□□□□□ -1.13
SFSWAP-204ENST00000535399 KRTAP23-1A1A580 65 aa7.88□□□□□ -1.15
SFSWAP-204ENST00000535399 GPR98Q8WXG9 6306 aa7.86□□□□□ -1.15
SFSWAP-204ENST00000535399 ROMO1P60602 79 aa7.83□□□□□ -1.16
SFSWAP-204ENST00000535399 KRTAP4-3Q9BYR4 195 aa7.82□□□□□ -1.16
SFSWAP-204ENST00000535399 KRTAP4-7Q9BYR0 210 aa7.75□□□□□ -1.17
SFSWAP-204ENST00000535399 KRTAP15-1Q3LI76 137 aa7.61□□□□□ -1.19
SFSWAP-204ENST00000535399 KRTAP19-4Q3LI73 84 aa7.58□□□□□ -1.2
SFSWAP-204ENST00000535399 KRTAP4-9Q9BYQ8 210 aa7.58□□□□□ -1.2
SFSWAP-204ENST00000535399 LCE4AQ5TA78 99 aa7.52□□□□□ -1.21
SFSWAP-204ENST00000535399 KRTAP5-4Q6L8H1 288 aa7.47□□□□□ -1.21
SFSWAP-204ENST00000535399 LCE1DQ5T752 114 aa7.45□□□□□ -1.22
SFSWAP-204ENST00000535399 BRK1Q8WUW1 75 aa7.43□□□□□ -1.22
SFSWAP-204ENST00000535399 LCE3CQ5T5A8 94 aa7.42□□□□□ -1.22
SFSWAP-204ENST00000535399 MT4P47944 62 aa7.39□□□□□ -1.23
SFSWAP-204ENST00000535399 HMCN1Q96RW7 5635 aa7.35□□□□□ -1.23
SFSWAP-204ENST00000535399 KRTAP5-5Q701N2 237 aaPredicted RBP7.34□□□□□ -1.23
SFSWAP-204ENST00000535399 LOC100996750A0A140TA64 210 aa7.32□□□□□ -1.24
SFSWAP-204ENST00000535399 KRTAP4-6Q9BYQ5 205 aa7.24□□□□□ -1.25
SFSWAP-204ENST00000535399 AHNAK2Q8IVF2 5795 aa7.05□□□□□ -1.28
SFSWAP-204ENST00000535399 KRTAP9-6A8MVA2 160 aa7.03□□□□□ -1.28
SFSWAP-204ENST00000535399 KRTAP12-4P60329 112 aa7.03□□□□□ -1.28
SFSWAP-204ENST00000535399 SYNE1Q8NF91 8797 aaKnown RBP7.03□□□□□ -1.28
SFSWAP-204ENST00000535399 KRTAP20-2Q3LI61 65 aa7.02□□□□□ -1.29
SFSWAP-204ENST00000535399 SPRR5A0A1B0GTR4 108 aa7.01□□□□□ -1.29
SFSWAP-204ENST00000535399 PMAIP1Q13794 54 aa6.99□□□□□ -1.29
SFSWAP-204ENST00000535399 KRTAP5-10Q6L8G5 202 aa6.98□□□□□ -1.29
SFSWAP-204ENST00000535399 MT1AP04731 61 aa6.91□□□□□ -1.3
SFSWAP-204ENST00000535399 KRTAP6-1Q3LI64 71 aa6.86□□□□□ -1.31
SFSWAP-204ENST00000535399 KRTAP5-7Q6L8G8 165 aa6.83□□□□□ -1.32
SFSWAP-204ENST00000535399 KRTAP5-3Q6L8H2 238 aa6.81□□□□□ -1.32
SFSWAP-204ENST00000535399 PRO0628Q9UI54 55 aa6.72□□□□□ -1.33
SFSWAP-204ENST00000535399 PRAC1Q96KF2 57 aa6.71□□□□□ -1.34
SFSWAP-204ENST00000535399 KRTAP9-4Q9BYQ2 154 aa6.65□□□□□ -1.34
SFSWAP-204ENST00000535399 KRTAP5-2Q701N4 177 aa6.61□□□□□ -1.35
SFSWAP-204ENST00000535399 KRTAP6-2Q3LI66 62 aa6.48□□□□□ -1.37
SFSWAP-204ENST00000535399 KTN1-AS1Q86SY8 53 aa6.36□□□□□ -1.39
SFSWAP-204ENST00000535399 KRTAP4-11Q9BYQ6 195 aa6.33□□□□□ -1.4
SFSWAP-204ENST00000535399 MT3P25713 68 aa6.3□□□□□ -1.4
SFSWAP-204ENST00000535399 KRTAP5-8O75690 187 aa6.12□□□□□ -1.43
SFSWAP-204ENST00000535399 OBSCNQ5VST9 7968 aa6.11□□□□□ -1.43
SFSWAP-204ENST00000535399 AHNAKQ09666 5890 aaKnown RBP6.08□□□□□ -1.44
SFSWAP-204ENST00000535399 SVIPQ8NHG7 77 aa6.04□□□□□ -1.44
SFSWAP-204ENST00000535399 MUC5ACP98088 5654 aa5.98□□□□□ -1.45
SFSWAP-204ENST00000535399 MUC5BQ9HC84 5762 aaPredicted RBP5.94□□□□□ -1.46
SFSWAP-204ENST00000535399 KRTAP5-1Q6L8H4 278 aa5.87□□□□□ -1.47
SFSWAP-204ENST00000535399 KRTAP9-9Q9BYP9 154 aa5.74□□□□□ -1.49
SFSWAP-204ENST00000535399 LCE1EQ5T753 118 aa5.72□□□□□ -1.49
SFSWAP-204ENST00000535399 LUZP6Q538Z0 58 aa5.57□□□□□ -1.52
SFSWAP-204ENST00000535399 LCE3DQ9BYE3 92 aa5.4□□□□□ -1.54
SFSWAP-204ENST00000535399 KRTAP4-2Q9BYR5 136 aa5.39□□□□□ -1.55
SFSWAP-204ENST00000535399 LCE1BQ5T7P3 118 aa5.35□□□□□ -1.55
SFSWAP-204ENST00000535399 LCE1CQ5T751 118 aa5.3□□□□□ -1.56
SFSWAP-204ENST00000535399 LCE3EQ5T5B0 92 aa5.13□□□□□ -1.59
SFSWAP-204ENST00000535399 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.88□□□□□ -1.63
SFSWAP-204ENST00000535399 KRTAP5-11Q6L8G4 156 aa4.78□□□□□ -1.64
SFSWAP-204ENST00000535399 KRTAP4-12Q9BQ66 201 aa4.75□□□□□ -1.65
SFSWAP-204ENST00000535399 NDUFAF8A1L188 74 aa4.74□□□□□ -1.65
SFSWAP-204ENST00000535399 LCE1FQ5T754 118 aa4.56□□□□□ -1.68
SFSWAP-204ENST00000535399 KRTAP21-2Q3LI59 83 aa4.52□□□□□ -1.69
SFSWAP-204ENST00000535399 PHGR1C9JFL3 82 aa4.14□□□□□ -1.75
SFSWAP-204ENST00000535399 KRTAP4-4Q9BYR3 166 aa4.09□□□□□ -1.75
SFSWAP-204ENST00000535399 PRM1P04553 51 aa4.03□□□□□ -1.76
SFSWAP-204ENST00000535399 H3BS24 57 aa4□□□□□ -1.77
SFSWAP-204ENST00000535399 INE1O15225 51 aa3.83□□□□□ -1.8
SFSWAP-204ENST00000535399 A0A0A0MQY5 61 aa3.82□□□□□ -1.8
SFSWAP-204ENST00000535399 MUC19Q7Z5P9 8384 aa3.73□□□□□ -1.81
SFSWAP-204ENST00000535399 KRTAP21-1Q3LI58 79 aa3.19□□□□□ -1.9
SFSWAP-204ENST00000535399 MUC16Q8WXI7 14507 aa2.75□□□□□ -1.97
Retrieved 78 of 20,778 RNA–protein pairs in 82.7 ms