RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	KRTAP4-9	Q9BYQ8	210 aa		4.91	□□□□□ -1.62
CAPN1-223	ENST00000533079	KTN1-AS1	Q86SY8	53 aa		4.9	□□□□□ -1.63
CAPN1-223	ENST00000533079	ROMO1	P60602	79 aa		4.86	□□□□□ -1.63
CAPN1-223	ENST00000533079	LCE1D	Q5T752	114 aa		4.79	□□□□□ -1.64
CAPN1-223	ENST00000533079	LCE5A	Q5TCM9	118 aa		4.79	□□□□□ -1.64
CAPN1-223	ENST00000533079	CAMK2N1	Q7Z7J9	78 aa		4.76	□□□□□ -1.65
CAPN1-223	ENST00000533079	HMCN1	Q96RW7	5635 aa		4.74	□□□□□ -1.65
CAPN1-223	ENST00000533079	KRTAP19-3	Q7Z4W3	81 aa		4.72	□□□□□ -1.65
CAPN1-223	ENST00000533079	C10orf95	Q9H7T3	257 aa		4.72	□□□□□ -1.65
CAPN1-223	ENST00000533079	LCE4A	Q5TA78	99 aa		4.71	□□□□□ -1.66
CAPN1-223	ENST00000533079	KRTAP5-10	Q6L8G5	202 aa		4.69	□□□□□ -1.66
CAPN1-223	ENST00000533079	PRAC1	Q96KF2	57 aa		4.68	□□□□□ -1.66
CAPN1-223	ENST00000533079	KRTAP25-1	Q3LHN0	102 aa		4.67	□□□□□ -1.66
CAPN1-223	ENST00000533079	AHNAK2	Q8IVF2	5795 aa		4.67	□□□□□ -1.66
CAPN1-223	ENST00000533079	MT1E	P04732	61 aa		4.66	□□□□□ -1.66
CAPN1-223	ENST00000533079	KRTAP19-7	Q3SYF9	63 aa		4.66	□□□□□ -1.66
CAPN1-223	ENST00000533079	MT4	P47944	62 aa		4.65	□□□□□ -1.67
CAPN1-223	ENST00000533079	KRTAP23-1	A1A580	65 aa		4.59	□□□□□ -1.67
CAPN1-223	ENST00000533079	TNP1	P09430	55 aa		4.59	□□□□□ -1.67
CAPN1-223	ENST00000533079	KRTAP5-7	Q6L8G8	165 aa		4.58	□□□□□ -1.68
CAPN1-223	ENST00000533079	PP632	Q6XCG6	107 aa		4.57	□□□□□ -1.68
CAPN1-223	ENST00000533079	MT1G	P13640	62 aa		4.56	□□□□□ -1.68
CAPN1-223	ENST00000533079	KRTAP5-4	Q6L8H1	288 aa		4.53	□□□□□ -1.68
CAPN1-223	ENST00000533079	KRTAP5-3	Q6L8H2	238 aa		4.46	□□□□□ -1.7
CAPN1-223	ENST00000533079	MT1M	Q8N339	61 aa		4.46	□□□□□ -1.7
CAPN1-223	ENST00000533079	KRTAP4-6	Q9BYQ5	205 aa		4.46	□□□□□ -1.7
CAPN1-223	ENST00000533079	KRTAP19-5	Q3LI72	72 aa		4.41	□□□□□ -1.7
CAPN1-223	ENST00000533079	MT1L	Q93083	61 aa		4.37	□□□□□ -1.71
CAPN1-223	ENST00000533079	SPRR5	A0A1B0GTR4	108 aa		4.34	□□□□□ -1.71
CAPN1-223	ENST00000533079	LCE3A	Q5TA76	89 aa		4.32	□□□□□ -1.72
CAPN1-223	ENST00000533079	KRTAP4-3	Q9BYR4	195 aa		4.3	□□□□□ -1.72
CAPN1-223	ENST00000533079	KRTAP20-2	Q3LI61	65 aa		4.29	□□□□□ -1.72
CAPN1-223	ENST00000533079	KRTAP12-3	P60328	96 aa		4.19	□□□□□ -1.74
CAPN1-223	ENST00000533079	KRTAP12-4	P60329	112 aa		4.16	□□□□□ -1.74
CAPN1-223	ENST00000533079	KRTAP15-1	Q3LI76	137 aa		4.15	□□□□□ -1.75
CAPN1-223	ENST00000533079	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.15	□□□□□ -1.75
CAPN1-223	ENST00000533079	KRTAP19-4	Q3LI73	84 aa		4.12	□□□□□ -1.75
CAPN1-223	ENST00000533079	KRTAP4-7	Q9BYR0	210 aa		4.06	□□□□□ -1.76
CAPN1-223	ENST00000533079	KRTAP4-11	Q9BYQ6	195 aa		4.02	□□□□□ -1.77
CAPN1-223	ENST00000533079	MUC5AC	P98088	5654 aa		4.01	□□□□□ -1.77
CAPN1-223	ENST00000533079	AHNAK	Q09666	5890 aa	Known RBP	3.98	□□□□□ -1.77
CAPN1-223	ENST00000533079	SYNE1	Q8NF91	8797 aa	Known RBP	3.97	□□□□□ -1.77
CAPN1-223	ENST00000533079	LCE3C	Q5T5A8	94 aa		3.93	□□□□□ -1.78
CAPN1-223	ENST00000533079	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.91	□□□□□ -1.78
CAPN1-223	ENST00000533079	KRTAP5-2	Q701N4	177 aa		3.9	□□□□□ -1.79
CAPN1-223	ENST00000533079	KRTAP5-8	O75690	187 aa		3.89	□□□□□ -1.79
CAPN1-223	ENST00000533079	LOC100996750	A0A140TA64	210 aa		3.88	□□□□□ -1.79
CAPN1-223	ENST00000533079	LUZP6	Q538Z0	58 aa		3.88	□□□□□ -1.79
CAPN1-223	ENST00000533079	KRTAP9-9	Q9BYP9	154 aa		3.78	□□□□□ -1.8
CAPN1-223	ENST00000533079	NDUFAF8	A1L188	74 aa		3.77	□□□□□ -1.81
CAPN1-223	ENST00000533079	MT1A	P04731	61 aa		3.72	□□□□□ -1.81
CAPN1-223	ENST00000533079	OBSCN	Q5VST9	7968 aa		3.71	□□□□□ -1.82
CAPN1-223	ENST00000533079	KRTAP6-1	Q3LI64	71 aa		3.69	□□□□□ -1.82
CAPN1-223	ENST00000533079	KRTAP9-6	A8MVA2	160 aa		3.68	□□□□□ -1.82
CAPN1-223	ENST00000533079	KRTAP6-2	Q3LI66	62 aa		3.62	□□□□□ -1.83
CAPN1-223	ENST00000533079	KRTAP9-4	Q9BYQ2	154 aa		3.62	□□□□□ -1.83
CAPN1-223	ENST00000533079	KRTAP5-1	Q6L8H4	278 aa		3.56	□□□□□ -1.84
CAPN1-223	ENST00000533079	MT3	P25713	68 aa		3.43	□□□□□ -1.86
CAPN1-223	ENST00000533079		A0A0A0MQY5	61 aa		3.39	□□□□□ -1.87
CAPN1-223	ENST00000533079		H3BS24	57 aa		3.36	□□□□□ -1.87
CAPN1-223	ENST00000533079	LCE1E	Q5T753	118 aa		3.29	□□□□□ -1.88
CAPN1-223	ENST00000533079	INE1	O15225	51 aa		3.22	□□□□□ -1.89
CAPN1-223	ENST00000533079	KRTAP4-2	Q9BYR5	136 aa		3.1	□□□□□ -1.91
CAPN1-223	ENST00000533079	LCE1C	Q5T751	118 aa		3.05	□□□□□ -1.92
CAPN1-223	ENST00000533079	LCE1B	Q5T7P3	118 aa		3.05	□□□□□ -1.92
CAPN1-223	ENST00000533079	LCE3D	Q9BYE3	92 aa		2.97	□□□□□ -1.93
CAPN1-223	ENST00000533079	LCE3E	Q5T5B0	92 aa		2.9	□□□□□ -1.95
CAPN1-223	ENST00000533079	KRTAP4-12	Q9BQ66	201 aa		2.9	□□□□□ -1.95
CAPN1-223	ENST00000533079	KRTAP5-11	Q6L8G4	156 aa		2.87	□□□□□ -1.95
CAPN1-223	ENST00000533079	LCE1F	Q5T754	118 aa		2.85	□□□□□ -1.95
CAPN1-223	ENST00000533079	PHGR1	C9JFL3	82 aa		2.75	□□□□□ -1.97
CAPN1-223	ENST00000533079	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.73	□□□□□ -1.97
CAPN1-223	ENST00000533079	PRM1	P04553	51 aa		2.49	□□□□□ -2.01
CAPN1-223	ENST00000533079	KRTAP21-2	Q3LI59	83 aa		2.45	□□□□□ -2.02
CAPN1-223	ENST00000533079	MUC19	Q7Z5P9	8384 aa		2.27	□□□□□ -2.05
CAPN1-223	ENST00000533079	KRTAP4-4	Q9BYR3	166 aa		2.24	□□□□□ -2.05
CAPN1-223	ENST00000533079	KRTAP21-1	Q3LI58	79 aa		2.12	□□□□□ -2.07
CAPN1-223	ENST00000533079	MUC16	Q8WXI7	14507 aa		1.64	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 8.9 ms