RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 KRTAP4-11Q9BYQ6 195 aa4.44□□□□□ -1.7
TRAPPC4-211ENST00000533012 KRTAP8-1Q8IUC2 63 aa4.43□□□□□ -1.7
TRAPPC4-211ENST00000533012 C10orf95Q9H7T3 257 aa4.42□□□□□ -1.7
TRAPPC4-211ENST00000533012 TNP1P09430 55 aa4.41□□□□□ -1.7
TRAPPC4-211ENST00000533012 KRTAP5-9P26371 169 aa4.38□□□□□ -1.71
TRAPPC4-211ENST00000533012 KRTAP23-1A1A580 65 aa4.37□□□□□ -1.71
TRAPPC4-211ENST00000533012 SPRR2FQ96RM1 72 aa4.35□□□□□ -1.71
TRAPPC4-211ENST00000533012 MUC12Q9UKN1 5478 aa4.34□□□□□ -1.71
TRAPPC4-211ENST00000533012 LCE5AQ5TCM9 118 aa4.33□□□□□ -1.72
TRAPPC4-211ENST00000533012 KRTAP20-1Q3LI63 56 aa4.31□□□□□ -1.72
TRAPPC4-211ENST00000533012 MDN1Q9NU22 5596 aa4.26□□□□□ -1.73
TRAPPC4-211ENST00000533012 SPRR2EP22531 72 aa4.21□□□□□ -1.74
TRAPPC4-211ENST00000533012 SPRR2BP35325 72 aa4.21□□□□□ -1.74
TRAPPC4-211ENST00000533012 SPRR2AP35326 72 aa4.21□□□□□ -1.74
TRAPPC4-211ENST00000533012 LCE3AQ5TA76 89 aa4.21□□□□□ -1.74
TRAPPC4-211ENST00000533012 KRTAP19-7Q3SYF9 63 aa4.19□□□□□ -1.74
TRAPPC4-211ENST00000533012 LCE1AQ5T7P2 110 aa4.18□□□□□ -1.74
TRAPPC4-211ENST00000533012 KRTAP19-5Q3LI72 72 aa4.17□□□□□ -1.74
TRAPPC4-211ENST00000533012 GPR98Q8WXG9 6306 aa4.16□□□□□ -1.74
TRAPPC4-211ENST00000533012 H3BS24 57 aa4.15□□□□□ -1.75
TRAPPC4-211ENST00000533012 MT1EP04732 61 aa4.14□□□□□ -1.75
TRAPPC4-211ENST00000533012 KRTAP15-1Q3LI76 137 aa4.09□□□□□ -1.75
TRAPPC4-211ENST00000533012 SPRR2DP22532 72 aa4.07□□□□□ -1.76
TRAPPC4-211ENST00000533012 KRTAP12-3P60328 96 aa4.07□□□□□ -1.76
TRAPPC4-211ENST00000533012 KRTAP5-3Q6L8H2 238 aa4.07□□□□□ -1.76
TRAPPC4-211ENST00000533012 KRTAP19-3Q7Z4W3 81 aa4.07□□□□□ -1.76
TRAPPC4-211ENST00000533012 KRTAP2-3P0C7H8 128 aa4.05□□□□□ -1.76
TRAPPC4-211ENST00000533012 KRTAP2-4Q9BYR9 128 aa4.05□□□□□ -1.76
TRAPPC4-211ENST00000533012 MT1GP13640 62 aa4.03□□□□□ -1.76
TRAPPC4-211ENST00000533012 LUZP6Q538Z0 58 aa4.01□□□□□ -1.77
TRAPPC4-211ENST00000533012 MT1LQ93083 61 aa4□□□□□ -1.77
TRAPPC4-211ENST00000533012 MT1MQ8N339 61 aa3.93□□□□□ -1.78
TRAPPC4-211ENST00000533012 KRTAP2-2Q9BYT5 123 aa3.92□□□□□ -1.78
TRAPPC4-211ENST00000533012 KRTAP2-1Q9BYU5 128 aa3.92□□□□□ -1.78
TRAPPC4-211ENST00000533012 NDUFAF8A1L188 74 aa3.88□□□□□ -1.79
TRAPPC4-211ENST00000533012 SPRR5A0A1B0GTR4 108 aa3.87□□□□□ -1.79
TRAPPC4-211ENST00000533012 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
TRAPPC4-211ENST00000533012 KRTAP4-3Q9BYR4 195 aa3.82□□□□□ -1.8
TRAPPC4-211ENST00000533012 LCE3CQ5T5A8 94 aa3.77□□□□□ -1.81
TRAPPC4-211ENST00000533012 A0A0A0MQY5 61 aa3.62□□□□□ -1.83
TRAPPC4-211ENST00000533012 KRTAP5-4Q6L8H1 288 aa3.58□□□□□ -1.84
TRAPPC4-211ENST00000533012 KRTAP5-5Q701N2 237 aaPredicted RBP3.56□□□□□ -1.84
TRAPPC4-211ENST00000533012 MT4P47944 62 aa3.54□□□□□ -1.84
TRAPPC4-211ENST00000533012 AHNAK2Q8IVF2 5795 aa3.54□□□□□ -1.84
TRAPPC4-211ENST00000533012 KRTAP9-6A8MVA2 160 aa3.51□□□□□ -1.85
TRAPPC4-211ENST00000533012 HMCN1Q96RW7 5635 aa3.5□□□□□ -1.85
TRAPPC4-211ENST00000533012 SYNE1Q8NF91 8797 aaKnown RBP3.47□□□□□ -1.85
TRAPPC4-211ENST00000533012 KRTAP12-4P60329 112 aa3.45□□□□□ -1.86
TRAPPC4-211ENST00000533012 KRTAP5-10Q6L8G5 202 aa3.44□□□□□ -1.86
TRAPPC4-211ENST00000533012 MT1AP04731 61 aa3.42□□□□□ -1.86
TRAPPC4-211ENST00000533012 KRTAP5-7Q6L8G8 165 aa3.39□□□□□ -1.87
TRAPPC4-211ENST00000533012 KRTAP6-1Q3LI64 71 aa3.38□□□□□ -1.87
TRAPPC4-211ENST00000533012 KRTAP20-2Q3LI61 65 aa3.37□□□□□ -1.87
TRAPPC4-211ENST00000533012 INE1O15225 51 aa3.34□□□□□ -1.87
TRAPPC4-211ENST00000533012 AHNAKQ09666 5890 aaKnown RBP3.19□□□□□ -1.9
TRAPPC4-211ENST00000533012 KRTAP6-2Q3LI66 62 aa3.18□□□□□ -1.9
TRAPPC4-211ENST00000533012 KRTAP5-2Q701N4 177 aa3.18□□□□□ -1.9
TRAPPC4-211ENST00000533012 MT3P25713 68 aa3.14□□□□□ -1.91
TRAPPC4-211ENST00000533012 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.05□□□□□ -1.92
TRAPPC4-211ENST00000533012 MUC5ACP98088 5654 aa3.03□□□□□ -1.92
TRAPPC4-211ENST00000533012 MUC5BQ9HC84 5762 aaPredicted RBP3.01□□□□□ -1.93
TRAPPC4-211ENST00000533012 OBSCNQ5VST9 7968 aa2.96□□□□□ -1.94
TRAPPC4-211ENST00000533012 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
TRAPPC4-211ENST00000533012 KRTAP5-8O75690 187 aa2.9□□□□□ -1.95
TRAPPC4-211ENST00000533012 LCE1EQ5T753 118 aa2.86□□□□□ -1.95
TRAPPC4-211ENST00000533012 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
TRAPPC4-211ENST00000533012 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
TRAPPC4-211ENST00000533012 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
TRAPPC4-211ENST00000533012 LCE1BQ5T7P3 118 aa2.63□□□□□ -1.99
TRAPPC4-211ENST00000533012 LCE1CQ5T751 118 aa2.6□□□□□ -1.99
TRAPPC4-211ENST00000533012 KRTAP4-4Q9BYR3 166 aa2.52□□□□□ -2.01
TRAPPC4-211ENST00000533012 PRM1P04553 51 aa2.44□□□□□ -2.02
TRAPPC4-211ENST00000533012 KRTAP21-2Q3LI59 83 aa2.22□□□□□ -2.05
TRAPPC4-211ENST00000533012 LCE1FQ5T754 118 aa2.22□□□□□ -2.05
TRAPPC4-211ENST00000533012 PHGR1C9JFL3 82 aa2□□□□□ -2.09
TRAPPC4-211ENST00000533012 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
TRAPPC4-211ENST00000533012 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
TRAPPC4-211ENST00000533012 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms