RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 CDC42SE1Q9NRR8 79 aa9.09□□□□□ -0.95
USP48-214ENST00000532737 KRTAP25-1Q3LHN0 102 aa9.07□□□□□ -0.96
USP48-214ENST00000532737 KRTAP19-3Q7Z4W3 81 aa9.01□□□□□ -0.97
USP48-214ENST00000532737 LCE5AQ5TCM9 118 aa8.97□□□□□ -0.97
USP48-214ENST00000532737 MT1LQ93083 61 aa8.87□□□□□ -0.99
USP48-214ENST00000532737 MT1GP13640 62 aa8.85□□□□□ -0.99
USP48-214ENST00000532737 KRTAP12-3P60328 96 aa8.85□□□□□ -0.99
USP48-214ENST00000532737 ROMO1P60602 79 aa8.84□□□□□ -0.99
USP48-214ENST00000532737 KRTAP23-1A1A580 65 aa8.75□□□□□ -1.01
USP48-214ENST00000532737 GPR98Q8WXG9 6306 aa8.74□□□□□ -1.01
USP48-214ENST00000532737 PP632Q6XCG6 107 aa8.73□□□□□ -1.01
USP48-214ENST00000532737 MT1MQ8N339 61 aa8.72□□□□□ -1.01
USP48-214ENST00000532737 DSTQ03001 7570 aaKnown RBP8.71□□□□□ -1.02
USP48-214ENST00000532737 KRTAP4-9Q9BYQ8 210 aa8.67□□□□□ -1.02
USP48-214ENST00000532737 BRK1Q8WUW1 75 aa8.6□□□□□ -1.03
USP48-214ENST00000532737 KRTAP4-3Q9BYR4 195 aa8.54□□□□□ -1.04
USP48-214ENST00000532737 KRTAP4-7Q9BYR0 210 aa8.5□□□□□ -1.05
USP48-214ENST00000532737 LCE1DQ5T752 114 aa8.44□□□□□ -1.06
USP48-214ENST00000532737 KRTAP15-1Q3LI76 137 aa8.42□□□□□ -1.06
USP48-214ENST00000532737 KRTAP19-4Q3LI73 84 aa8.32□□□□□ -1.08
USP48-214ENST00000532737 LCE4AQ5TA78 99 aa8.29□□□□□ -1.08
USP48-214ENST00000532737 HMCN1Q96RW7 5635 aa8.28□□□□□ -1.08
USP48-214ENST00000532737 MT4P47944 62 aa8.26□□□□□ -1.09
USP48-214ENST00000532737 LCE3CQ5T5A8 94 aa8.2□□□□□ -1.1
USP48-214ENST00000532737 AHNAK2Q8IVF2 5795 aa8.14□□□□□ -1.11
USP48-214ENST00000532737 KRTAP5-4Q6L8H1 288 aa8.12□□□□□ -1.11
USP48-214ENST00000532737 PMAIP1Q13794 54 aa8.1□□□□□ -1.11
USP48-214ENST00000532737 KRTAP5-10Q6L8G5 202 aa8.06□□□□□ -1.12
USP48-214ENST00000532737 H3BS24 57 aa8.05□□□□□ -1.12
USP48-214ENST00000532737 KRTAP4-6Q9BYQ5 205 aa8.02□□□□□ -1.13
USP48-214ENST00000532737 LOC100996750A0A140TA64 210 aa8.01□□□□□ -1.13
USP48-214ENST00000532737 KRTAP5-5Q701N2 237 aaPredicted RBP7.96□□□□□ -1.14
USP48-214ENST00000532737 PRO0628Q9UI54 55 aa7.87□□□□□ -1.15
USP48-214ENST00000532737 KRTAP5-7Q6L8G8 165 aa7.79□□□□□ -1.16
USP48-214ENST00000532737 KRTAP5-3Q6L8H2 238 aa7.77□□□□□ -1.17
USP48-214ENST00000532737 KRTAP9-6A8MVA2 160 aa7.76□□□□□ -1.17
USP48-214ENST00000532737 PRAC1Q96KF2 57 aa7.74□□□□□ -1.17
USP48-214ENST00000532737 KRTAP20-2Q3LI61 65 aa7.67□□□□□ -1.18
USP48-214ENST00000532737 KRTAP12-4P60329 112 aa7.6□□□□□ -1.19
USP48-214ENST00000532737 SYNE1Q8NF91 8797 aaKnown RBP7.59□□□□□ -1.19
USP48-214ENST00000532737 SPRR5A0A1B0GTR4 108 aa7.57□□□□□ -1.2
USP48-214ENST00000532737 MT1AP04731 61 aa7.54□□□□□ -1.2
USP48-214ENST00000532737 KRTAP6-1Q3LI64 71 aa7.49□□□□□ -1.21
USP48-214ENST00000532737 KTN1-AS1Q86SY8 53 aa7.42□□□□□ -1.22
USP48-214ENST00000532737 KRTAP9-4Q9BYQ2 154 aa7.25□□□□□ -1.25
USP48-214ENST00000532737 KRTAP5-2Q701N4 177 aa7.13□□□□□ -1.27
USP48-214ENST00000532737 KRTAP4-11Q9BYQ6 195 aa7.09□□□□□ -1.27
USP48-214ENST00000532737 KRTAP4-12Q9BQ66 201 aa7.07□□□□□ -1.28
USP48-214ENST00000532737 KRTAP6-2Q3LI66 62 aa7.06□□□□□ -1.28
USP48-214ENST00000532737 SVIPQ8NHG7 77 aa7.06□□□□□ -1.28
USP48-214ENST00000532737 KRTAP5-8O75690 187 aa6.89□□□□□ -1.31
USP48-214ENST00000532737 MT3P25713 68 aa6.87□□□□□ -1.31
USP48-214ENST00000532737 MUC5ACP98088 5654 aa6.78□□□□□ -1.32
USP48-214ENST00000532737 AHNAKQ09666 5890 aaKnown RBP6.74□□□□□ -1.33
USP48-214ENST00000532737 KRTAP9-9Q9BYP9 154 aa6.73□□□□□ -1.33
USP48-214ENST00000532737 MUC5BQ9HC84 5762 aaPredicted RBP6.71□□□□□ -1.33
USP48-214ENST00000532737 OBSCNQ5VST9 7968 aa6.62□□□□□ -1.35
USP48-214ENST00000532737 LUZP6Q538Z0 58 aa6.39□□□□□ -1.39
USP48-214ENST00000532737 KRTAP5-1Q6L8H4 278 aa6.39□□□□□ -1.39
USP48-214ENST00000532737 LCE1EQ5T753 118 aa6.2□□□□□ -1.42
USP48-214ENST00000532737 LCE3DQ9BYE3 92 aa5.99□□□□□ -1.45
USP48-214ENST00000532737 KRTAP4-2Q9BYR5 136 aa5.99□□□□□ -1.45
USP48-214ENST00000532737 LCE1BQ5T7P3 118 aa5.82□□□□□ -1.48
USP48-214ENST00000532737 LCE1CQ5T751 118 aa5.75□□□□□ -1.49
USP48-214ENST00000532737 LCE3EQ5T5B0 92 aa5.72□□□□□ -1.49
USP48-214ENST00000532737 NDUFAF8A1L188 74 aa5.59□□□□□ -1.51
USP48-214ENST00000532737 A0A0A0MQY5 61 aa5.55□□□□□ -1.52
USP48-214ENST00000532737 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.29□□□□□ -1.56
USP48-214ENST00000532737 KRTAP5-11Q6L8G4 156 aa5.16□□□□□ -1.58
USP48-214ENST00000532737 LCE1FQ5T754 118 aa4.98□□□□□ -1.61
USP48-214ENST00000532737 KRTAP21-2Q3LI59 83 aa4.93□□□□□ -1.62
USP48-214ENST00000532737 PHGR1C9JFL3 82 aa4.68□□□□□ -1.66
USP48-214ENST00000532737 PRM1P04553 51 aa4.56□□□□□ -1.68
USP48-214ENST00000532737 INE1O15225 51 aa4.53□□□□□ -1.68
USP48-214ENST00000532737 KRTAP4-4Q9BYR3 166 aa4.47□□□□□ -1.69
USP48-214ENST00000532737 MUC19Q7Z5P9 8384 aa4.11□□□□□ -1.75
USP48-214ENST00000532737 KRTAP21-1Q3LI58 79 aa3.55□□□□□ -1.84
USP48-214ENST00000532737 MUC16Q8WXI7 14507 aa2.94□□□□□ -1.94
Retrieved 78 of 20,778 RNA–protein pairs in 128.3 ms