RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SPRR2DP22532 72 aa5.42□□□□□ -1.54
USF1-209ENST00000529476 TNP1P09430 55 aa5.36□□□□□ -1.55
USF1-209ENST00000529476 LCE3BQ5TA77 95 aa5.33□□□□□ -1.56
USF1-209ENST00000529476 KRTAP19-7Q3SYF9 63 aa5.25□□□□□ -1.57
USF1-209ENST00000529476 LCE3AQ5TA76 89 aa5.25□□□□□ -1.57
USF1-209ENST00000529476 KRTAP25-1Q3LHN0 102 aa5.22□□□□□ -1.57
USF1-209ENST00000529476 KRTAP19-5Q3LI72 72 aa5.21□□□□□ -1.58
USF1-209ENST00000529476 DSTQ03001 7570 aaKnown RBP5.18□□□□□ -1.58
USF1-209ENST00000529476 MT1EP04732 61 aa5.18□□□□□ -1.58
USF1-209ENST00000529476 KRTAP4-9Q9BYQ8 210 aa5.16□□□□□ -1.58
USF1-209ENST00000529476 ROMO1P60602 79 aa5.15□□□□□ -1.59
USF1-209ENST00000529476 PRAC1Q96KF2 57 aa5.08□□□□□ -1.6
USF1-209ENST00000529476 KRTAP19-3Q7Z4W3 81 aa5.06□□□□□ -1.6
USF1-209ENST00000529476 KRTAP12-3P60328 96 aa5.04□□□□□ -1.6
USF1-209ENST00000529476 LCE5AQ5TCM9 118 aa5.03□□□□□ -1.6
USF1-209ENST00000529476 KRTAP23-1A1A580 65 aa5.02□□□□□ -1.61
USF1-209ENST00000529476 MT1LQ93083 61 aa5.01□□□□□ -1.61
USF1-209ENST00000529476 MT1GP13640 62 aa4.97□□□□□ -1.61
USF1-209ENST00000529476 LCE1DQ5T752 114 aa4.95□□□□□ -1.62
USF1-209ENST00000529476 PP632Q6XCG6 107 aa4.92□□□□□ -1.62
USF1-209ENST00000529476 HMCN1Q96RW7 5635 aa4.91□□□□□ -1.62
USF1-209ENST00000529476 MT1MQ8N339 61 aa4.91□□□□□ -1.62
USF1-209ENST00000529476 AHNAK2Q8IVF2 5795 aa4.9□□□□□ -1.62
USF1-209ENST00000529476 KRTAP5-10Q6L8G5 202 aa4.9□□□□□ -1.63
USF1-209ENST00000529476 MT4P47944 62 aa4.82□□□□□ -1.64
USF1-209ENST00000529476 KRTAP15-1Q3LI76 137 aa4.81□□□□□ -1.64
USF1-209ENST00000529476 KRTAP4-7Q9BYR0 210 aa4.81□□□□□ -1.64
USF1-209ENST00000529476 KRTAP4-3Q9BYR4 195 aa4.81□□□□□ -1.64
USF1-209ENST00000529476 KRTAP5-7Q6L8G8 165 aa4.78□□□□□ -1.64
USF1-209ENST00000529476 LCE4AQ5TA78 99 aa4.73□□□□□ -1.65
USF1-209ENST00000529476 KRTAP19-4Q3LI73 84 aa4.72□□□□□ -1.65
USF1-209ENST00000529476 H3BS24 57 aa4.68□□□□□ -1.66
USF1-209ENST00000529476 LCE3CQ5T5A8 94 aa4.68□□□□□ -1.66
USF1-209ENST00000529476 KRTAP5-3Q6L8H2 238 aa4.65□□□□□ -1.67
USF1-209ENST00000529476 SPRR5A0A1B0GTR4 108 aa4.64□□□□□ -1.67
USF1-209ENST00000529476 KRTAP4-6Q9BYQ5 205 aa4.63□□□□□ -1.67
USF1-209ENST00000529476 KRTAP5-4Q6L8H1 288 aa4.57□□□□□ -1.68
USF1-209ENST00000529476 LOC100996750A0A140TA64 210 aa4.53□□□□□ -1.68
USF1-209ENST00000529476 KRTAP5-5Q701N2 237 aaPredicted RBP4.47□□□□□ -1.69
USF1-209ENST00000529476 KRTAP9-6A8MVA2 160 aa4.42□□□□□ -1.7
USF1-209ENST00000529476 KRTAP20-2Q3LI61 65 aa4.35□□□□□ -1.71
USF1-209ENST00000529476 NDUFAF8A1L188 74 aa4.32□□□□□ -1.72
USF1-209ENST00000529476 MT1AP04731 61 aa4.26□□□□□ -1.73
USF1-209ENST00000529476 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
USF1-209ENST00000529476 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
USF1-209ENST00000529476 SYNE1Q8NF91 8797 aaKnown RBP4.18□□□□□ -1.74
USF1-209ENST00000529476 AHNAKQ09666 5890 aaKnown RBP4.18□□□□□ -1.74
USF1-209ENST00000529476 MUC5ACP98088 5654 aa4.16□□□□□ -1.74
USF1-209ENST00000529476 KRTAP4-11Q9BYQ6 195 aa4.12□□□□□ -1.75
USF1-209ENST00000529476 KRTAP9-4Q9BYQ2 154 aa4.09□□□□□ -1.75
USF1-209ENST00000529476 MUC5BQ9HC84 5762 aaPredicted RBP4.09□□□□□ -1.75
USF1-209ENST00000529476 LUZP6Q538Z0 58 aa4.08□□□□□ -1.76
USF1-209ENST00000529476 KRTAP5-8O75690 187 aa4.04□□□□□ -1.76
USF1-209ENST00000529476 A0A0A0MQY5 61 aa3.99□□□□□ -1.77
USF1-209ENST00000529476 KRTAP5-2Q701N4 177 aa3.99□□□□□ -1.77
USF1-209ENST00000529476 KRTAP6-2Q3LI66 62 aa3.97□□□□□ -1.77
USF1-209ENST00000529476 MT3P25713 68 aa3.87□□□□□ -1.79
USF1-209ENST00000529476 KRTAP9-9Q9BYP9 154 aa3.87□□□□□ -1.79
USF1-209ENST00000529476 OBSCNQ5VST9 7968 aa3.81□□□□□ -1.8
USF1-209ENST00000529476 INE1O15225 51 aa3.66□□□□□ -1.82
USF1-209ENST00000529476 KRTAP5-1Q6L8H4 278 aa3.62□□□□□ -1.83
USF1-209ENST00000529476 LCE1EQ5T753 118 aa3.46□□□□□ -1.86
USF1-209ENST00000529476 LCE3DQ9BYE3 92 aa3.43□□□□□ -1.86
USF1-209ENST00000529476 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
USF1-209ENST00000529476 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
USF1-209ENST00000529476 KRTAP4-2Q9BYR5 136 aa3.27□□□□□ -1.89
USF1-209ENST00000529476 LCE1CQ5T751 118 aa3.22□□□□□ -1.89
USF1-209ENST00000529476 KRTAP4-12Q9BQ66 201 aa3.08□□□□□ -1.92
USF1-209ENST00000529476 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.97□□□□□ -1.93
USF1-209ENST00000529476 KRTAP5-11Q6L8G4 156 aa2.89□□□□□ -1.95
USF1-209ENST00000529476 PHGR1C9JFL3 82 aa2.87□□□□□ -1.95
USF1-209ENST00000529476 LCE1FQ5T754 118 aa2.8□□□□□ -1.96
USF1-209ENST00000529476 KRTAP21-2Q3LI59 83 aa2.77□□□□□ -1.97
USF1-209ENST00000529476 PRM1P04553 51 aa2.66□□□□□ -1.98
USF1-209ENST00000529476 KRTAP4-4Q9BYR3 166 aa2.52□□□□□ -2.01
USF1-209ENST00000529476 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
USF1-209ENST00000529476 KRTAP21-1Q3LI58 79 aa2.16□□□□□ -2.06
USF1-209ENST00000529476 MUC16Q8WXI7 14507 aa1.67□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 9.8 ms