RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 KRTAP12-1P59990 96 aa3.14□□□□□ -1.91
CD44-228ENST00000528455 SPINT4Q6UDR6 99 aa3.12□□□□□ -1.91
CD44-228ENST00000528455 CDC42SE1Q9NRR8 79 aa3.12□□□□□ -1.91
CD44-228ENST00000528455 KRTAP12-2P59991 146 aa3.11□□□□□ -1.91
CD44-228ENST00000528455 K7ERS5 55 aa3.1□□□□□ -1.91
CD44-228ENST00000528455 KRTAP6-3Q3LI67 103 aa3.1□□□□□ -1.91
CD44-228ENST00000528455 PRO2289Q9P1D8 64 aa3.1□□□□□ -1.91
CD44-228ENST00000528455 CAMK2N1Q7Z7J9 78 aa3.09□□□□□ -1.91
CD44-228ENST00000528455 NEBP20929 6669 aa3.08□□□□□ -1.92
CD44-228ENST00000528455 MT1XP80297 61 aa3.06□□□□□ -1.92
CD44-228ENST00000528455 MUC12Q9UKN1 5478 aa3.04□□□□□ -1.92
CD44-228ENST00000528455 BRK1Q8WUW1 75 aa3.02□□□□□ -1.93
CD44-228ENST00000528455 MDN1Q9NU22 5596 aa2.98□□□□□ -1.93
CD44-228ENST00000528455 KRTAP5-1Q6L8H4 278 aa2.98□□□□□ -1.93
CD44-228ENST00000528455 C10orf95Q9H7T3 257 aa2.98□□□□□ -1.93
CD44-228ENST00000528455 KMT2DO14686 5537 aa2.97□□□□□ -1.93
CD44-228ENST00000528455 PRO0628Q9UI54 55 aa2.96□□□□□ -1.94
CD44-228ENST00000528455 TNP1P09430 55 aa2.94□□□□□ -1.94
CD44-228ENST00000528455 KRTAP5-9P26371 169 aa2.94□□□□□ -1.94
CD44-228ENST00000528455 ROMO1P60602 79 aa2.93□□□□□ -1.94
CD44-228ENST00000528455 KRTAP25-1Q3LHN0 102 aa2.91□□□□□ -1.94
CD44-228ENST00000528455 PMAIP1Q13794 54 aa2.9□□□□□ -1.95
CD44-228ENST00000528455 KRTAP20-1Q3LI63 56 aa2.88□□□□□ -1.95
CD44-228ENST00000528455 SPRR2FQ96RM1 72 aa2.86□□□□□ -1.95
CD44-228ENST00000528455 KRTAP8-1Q8IUC2 63 aa2.85□□□□□ -1.95
CD44-228ENST00000528455 SPRR2EP22531 72 aa2.82□□□□□ -1.96
CD44-228ENST00000528455 SPRR2BP35325 72 aa2.82□□□□□ -1.96
CD44-228ENST00000528455 SPRR2AP35326 72 aa2.82□□□□□ -1.96
CD44-228ENST00000528455 KRTAP4-4Q9BYR3 166 aa2.82□□□□□ -1.96
CD44-228ENST00000528455 KRTAP2-3P0C7H8 128 aa2.81□□□□□ -1.96
CD44-228ENST00000528455 KRTAP2-4Q9BYR9 128 aa2.81□□□□□ -1.96
CD44-228ENST00000528455 LCE3AQ5TA76 89 aa2.8□□□□□ -1.96
CD44-228ENST00000528455 KRTAP5-4Q6L8H1 288 aa2.8□□□□□ -1.96
CD44-228ENST00000528455 PP632Q6XCG6 107 aa2.8□□□□□ -1.96
CD44-228ENST00000528455 KRTAP19-7Q3SYF9 63 aa2.74□□□□□ -1.97
CD44-228ENST00000528455 SPRR2DP22532 72 aa2.73□□□□□ -1.97
CD44-228ENST00000528455 KRTAP19-5Q3LI72 72 aa2.73□□□□□ -1.97
CD44-228ENST00000528455 KRTAP2-1Q9BYU5 128 aa2.72□□□□□ -1.97
CD44-228ENST00000528455 KRTAP12-3P60328 96 aa2.71□□□□□ -1.98
CD44-228ENST00000528455 KTN1-AS1Q86SY8 53 aa2.7□□□□□ -1.98
CD44-228ENST00000528455 MT1EP04732 61 aa2.69□□□□□ -1.98
CD44-228ENST00000528455 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
CD44-228ENST00000528455 MT1GP13640 62 aa2.64□□□□□ -1.99
CD44-228ENST00000528455 KRTAP19-3Q7Z4W3 81 aa2.63□□□□□ -1.99
CD44-228ENST00000528455 MT1LQ93083 61 aa2.62□□□□□ -1.99
CD44-228ENST00000528455 LCE3DQ9BYE3 92 aa2.62□□□□□ -1.99
CD44-228ENST00000528455 KRTAP5-5Q701N2 237 aaPredicted RBP2.6□□□□□ -1.99
CD44-228ENST00000528455 DSTQ03001 7570 aaKnown RBP2.6□□□□□ -1.99
CD44-228ENST00000528455 KRTAP4-3Q9BYR4 195 aa2.56□□□□□ -2
CD44-228ENST00000528455 MT1MQ8N339 61 aa2.54□□□□□ -2
CD44-228ENST00000528455 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
CD44-228ENST00000528455 SPRR5A0A1B0GTR4 108 aa2.51□□□□□ -2.01
CD44-228ENST00000528455 LCE1CQ5T751 118 aa2.42□□□□□ -2.02
CD44-228ENST00000528455 LCE1BQ5T7P3 118 aa2.42□□□□□ -2.02
CD44-228ENST00000528455 HMCN1Q96RW7 5635 aa2.42□□□□□ -2.02
CD44-228ENST00000528455 MT4P47944 62 aa2.39□□□□□ -2.03
CD44-228ENST00000528455 AHNAK2Q8IVF2 5795 aa2.34□□□□□ -2.04
CD44-228ENST00000528455 LUZP6Q538Z0 58 aa2.28□□□□□ -2.04
CD44-228ENST00000528455 KRTAP5-2Q701N4 177 aa2.25□□□□□ -2.05
CD44-228ENST00000528455 SYNE1Q8NF91 8797 aaKnown RBP2.25□□□□□ -2.05
CD44-228ENST00000528455 MT1AP04731 61 aa2.24□□□□□ -2.05
CD44-228ENST00000528455 KRTAP5-10Q6L8G5 202 aa2.24□□□□□ -2.05
CD44-228ENST00000528455 KRTAP12-4P60329 112 aa2.23□□□□□ -2.05
CD44-228ENST00000528455 KRTAP20-2Q3LI61 65 aa2.22□□□□□ -2.05
CD44-228ENST00000528455 KRTAP6-1Q3LI64 71 aa2.2□□□□□ -2.06
CD44-228ENST00000528455 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
CD44-228ENST00000528455 KRTAP6-2Q3LI66 62 aa2.05□□□□□ -2.08
CD44-228ENST00000528455 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
CD44-228ENST00000528455 KRTAP5-8O75690 187 aa1.96□□□□□ -2.1
CD44-228ENST00000528455 AHNAKQ09666 5890 aaKnown RBP1.96□□□□□ -2.1
CD44-228ENST00000528455 MUC5BQ9HC84 5762 aaPredicted RBP1.94□□□□□ -2.1
CD44-228ENST00000528455 MUC5ACP98088 5654 aa1.91□□□□□ -2.1
CD44-228ENST00000528455 INE1O15225 51 aa1.84□□□□□ -2.11
CD44-228ENST00000528455 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
CD44-228ENST00000528455 PRM1P04553 51 aa1.49□□□□□ -2.17
CD44-228ENST00000528455 PHGR1C9JFL3 82 aa1.31□□□□□ -2.2
CD44-228ENST00000528455 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
CD44-228ENST00000528455 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 8.4 ms