RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 RPS29P62273 56 aaKnown RBP1.16□□□□□ -2.22
LIMCH1-212ENST00000511424 TPRXLQ17RH7 258 aa1.15□□□□□ -2.23
LIMCH1-212ENST00000511424 SPATA8Q6RVD6 105 aa1.15□□□□□ -2.23
LIMCH1-212ENST00000511424 MIR22HGQ0VDD5 57 aa1.14□□□□□ -2.23
LIMCH1-212ENST00000511424 UQCR11O14957 56 aa1.11□□□□□ -2.23
LIMCH1-212ENST00000511424 MT1HP80294 61 aa1.11□□□□□ -2.23
LIMCH1-212ENST00000511424 DMAC1Q96GE9 116 aa1.11□□□□□ -2.23
LIMCH1-212ENST00000511424 PRO2289Q9P1D8 64 aa1.1□□□□□ -2.23
LIMCH1-212ENST00000511424 KRTAP6-3Q3LI67 103 aa1.09□□□□□ -2.23
LIMCH1-212ENST00000511424 COX6B2Q6YFQ2 88 aa1.09□□□□□ -2.23
LIMCH1-212ENST00000511424 TP53AIP1Q9HCN2 124 aa1.09□□□□□ -2.23
LIMCH1-212ENST00000511424 MT2AP02795 61 aa1.08□□□□□ -2.24
LIMCH1-212ENST00000511424 MT1FP04733 61 aa1.08□□□□□ -2.24
LIMCH1-212ENST00000511424 A0A1B0GU69 56 aa1.07□□□□□ -2.24
LIMCH1-212ENST00000511424 H1FX-AS1Q4G0G2 97 aa1.07□□□□□ -2.24
LIMCH1-212ENST00000511424 CRCT1Q9UGL9 99 aa1.07□□□□□ -2.24
LIMCH1-212ENST00000511424 USH2AO75445 5202 aa1.07□□□□□ -2.24
LIMCH1-212ENST00000511424 KRTAP13-4Q3LI77 160 aa1.06□□□□□ -2.24
LIMCH1-212ENST00000511424 SSPOA2VEC9 5147 aa1.06□□□□□ -2.24
LIMCH1-212ENST00000511424 H0YAA0 97 aa1.05□□□□□ -2.24
LIMCH1-212ENST00000511424 S4R3F8 94 aa1.05□□□□□ -2.24
LIMCH1-212ENST00000511424 M0R2T5 61 aa1.04□□□□□ -2.24
LIMCH1-212ENST00000511424 ACYP2P14621 99 aa1.04□□□□□ -2.24
LIMCH1-212ENST00000511424 MT1BP07438 61 aa1.02□□□□□ -2.25
LIMCH1-212ENST00000511424 KRTAP12-1P59990 96 aa1.02□□□□□ -2.25
LIMCH1-212ENST00000511424 FSIP2Q5CZC0 6907 aa1.01□□□□□ -2.25
LIMCH1-212ENST00000511424 A0A0D9SG42 100 aa1.01□□□□□ -2.25
LIMCH1-212ENST00000511424 KMT2DO14686 5537 aa0.99□□□□□ -2.25
LIMCH1-212ENST00000511424 FCGBPQ9Y6R7 5405 aaPredicted RBP0.98□□□□□ -2.25
LIMCH1-212ENST00000511424 M0QZ58 72 aa0.98□□□□□ -2.25
LIMCH1-212ENST00000511424 CRIPTQ9P021 101 aa0.98□□□□□ -2.25
LIMCH1-212ENST00000511424 KRTAP19-8Q3LI54 63 aa0.97□□□□□ -2.25
LIMCH1-212ENST00000511424 SPRR2GQ9BYE4 73 aa0.97□□□□□ -2.25
LIMCH1-212ENST00000511424 MT1XP80297 61 aa0.96□□□□□ -2.26
LIMCH1-212ENST00000511424 C10orf95Q9H7T3 257 aa0.96□□□□□ -2.26
LIMCH1-212ENST00000511424 INE1O15225 51 aa0.93□□□□□ -2.26
LIMCH1-212ENST00000511424 PLAC4Q8WY50 150 aa0.93□□□□□ -2.26
LIMCH1-212ENST00000511424 KRTAP19-6Q3LI70 58 aa0.92□□□□□ -2.26
LIMCH1-212ENST00000511424 MACF1Q9UPN3 7388 aaKnown RBP0.92□□□□□ -2.26
LIMCH1-212ENST00000511424 MUC12Q9UKN1 5478 aa0.91□□□□□ -2.26
LIMCH1-212ENST00000511424 SYNE2Q8WXH0 6885 aaKnown RBP0.89□□□□□ -2.27
LIMCH1-212ENST00000511424 KRTAP19-5Q3LI72 72 aa0.87□□□□□ -2.27
LIMCH1-212ENST00000511424 KRTAP19-7Q3SYF9 63 aa0.86□□□□□ -2.27
LIMCH1-212ENST00000511424 MDN1Q9NU22 5596 aa0.84□□□□□ -2.27
LIMCH1-212ENST00000511424 MT1EP04732 61 aa0.83□□□□□ -2.28
LIMCH1-212ENST00000511424 KRTAP8-1Q8IUC2 63 aa0.83□□□□□ -2.28
LIMCH1-212ENST00000511424 SPRR2FQ96RM1 72 aa0.83□□□□□ -2.28
LIMCH1-212ENST00000511424 TNP1P09430 55 aa0.81□□□□□ -2.28
LIMCH1-212ENST00000511424 MT1LQ93083 61 aa0.81□□□□□ -2.28
LIMCH1-212ENST00000511424 NEBP20929 6669 aa0.81□□□□□ -2.28
LIMCH1-212ENST00000511424 DSTQ03001 7570 aaKnown RBP0.81□□□□□ -2.28
LIMCH1-212ENST00000511424 SYNE1Q8NF91 8797 aaKnown RBP0.79□□□□□ -2.28
LIMCH1-212ENST00000511424 SPRR2EP22531 72 aa0.79□□□□□ -2.28
LIMCH1-212ENST00000511424 SPRR2BP35325 72 aa0.79□□□□□ -2.28
LIMCH1-212ENST00000511424 SPRR2AP35326 72 aa0.79□□□□□ -2.28
LIMCH1-212ENST00000511424 MT1MQ8N339 61 aa0.79□□□□□ -2.28
LIMCH1-212ENST00000511424 MT1GP13640 62 aa0.78□□□□□ -2.28
LIMCH1-212ENST00000511424 KRTAP19-3Q7Z4W3 81 aa0.78□□□□□ -2.28
LIMCH1-212ENST00000511424 SPRR2DP22532 72 aa0.76□□□□□ -2.29
LIMCH1-212ENST00000511424 KRTAP6-1Q3LI64 71 aa0.72□□□□□ -2.29
LIMCH1-212ENST00000511424 MT4P47944 62 aa0.71□□□□□ -2.3
LIMCH1-212ENST00000511424 KRTAP20-1Q3LI63 56 aa0.71□□□□□ -2.3
LIMCH1-212ENST00000511424 KRTAP2-3P0C7H8 128 aa0.7□□□□□ -2.3
LIMCH1-212ENST00000511424 KRTAP2-4Q9BYR9 128 aa0.7□□□□□ -2.3
LIMCH1-212ENST00000511424 KRTAP2-1Q9BYU5 128 aa0.69□□□□□ -2.3
LIMCH1-212ENST00000511424 AHNAK2Q8IVF2 5795 aa0.66□□□□□ -2.3
LIMCH1-212ENST00000511424 MT1AP04731 61 aa0.66□□□□□ -2.3
LIMCH1-212ENST00000511424 KRTAP20-2Q3LI61 65 aa0.65□□□□□ -2.31
LIMCH1-212ENST00000511424 KRTAP6-2Q3LI66 62 aa0.65□□□□□ -2.31
LIMCH1-212ENST00000511424 KRTAP5-10Q6L8G5 202 aa0.61□□□□□ -2.31
LIMCH1-212ENST00000511424 GPR98Q8WXG9 6306 aa0.59□□□□□ -2.31
LIMCH1-212ENST00000511424 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.32
LIMCH1-212ENST00000511424 MUC5ACP98088 5654 aa0.58□□□□□ -2.32
LIMCH1-212ENST00000511424 MUC5BQ9HC84 5762 aaPredicted RBP0.58□□□□□ -2.32
LIMCH1-212ENST00000511424 PRM1P04553 51 aa0.55□□□□□ -2.32
LIMCH1-212ENST00000511424 AHNAKQ09666 5890 aaKnown RBP0.5□□□□□ -2.33
LIMCH1-212ENST00000511424 KRTAP21-1Q3LI58 79 aa0.41□□□□□ -2.34
LIMCH1-212ENST00000511424 PHGR1C9JFL3 82 aa0.37□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 72.4 ms