RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 KRTAP19-3Q7Z4W3 81 aa5.48□□□□□ -1.53
RNF4-210ENST00000508235 CDC42SE1Q9NRR8 79 aa5.47□□□□□ -1.53
RNF4-210ENST00000508235 LCE5AQ5TCM9 118 aa5.45□□□□□ -1.54
RNF4-210ENST00000508235 KRTAP2-2Q9BYT5 123 aa5.41□□□□□ -1.54
RNF4-210ENST00000508235 KRTAP2-1Q9BYU5 128 aa5.41□□□□□ -1.54
RNF4-210ENST00000508235 LCE3BQ5TA77 95 aa5.4□□□□□ -1.54
RNF4-210ENST00000508235 MT1GP13640 62 aa5.39□□□□□ -1.55
RNF4-210ENST00000508235 PP632Q6XCG6 107 aa5.39□□□□□ -1.55
RNF4-210ENST00000508235 KRTAP4-12Q9BQ66 201 aa5.38□□□□□ -1.55
RNF4-210ENST00000508235 KRTAP12-3P60328 96 aa5.36□□□□□ -1.55
RNF4-210ENST00000508235 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
RNF4-210ENST00000508235 MT1LQ93083 61 aa5.35□□□□□ -1.55
RNF4-210ENST00000508235 ROMO1P60602 79 aa5.34□□□□□ -1.55
RNF4-210ENST00000508235 KRTAP9-9Q9BYP9 154 aa5.3□□□□□ -1.56
RNF4-210ENST00000508235 KRTAP9-4Q9BYQ2 154 aa5.3□□□□□ -1.56
RNF4-210ENST00000508235 MT1MQ8N339 61 aa5.27□□□□□ -1.57
RNF4-210ENST00000508235 KRTAP19-4Q3LI73 84 aa5.15□□□□□ -1.59
RNF4-210ENST00000508235 BRK1Q8WUW1 75 aa5.15□□□□□ -1.59
RNF4-210ENST00000508235 DSTQ03001 7570 aaKnown RBP5.12□□□□□ -1.59
RNF4-210ENST00000508235 KRTAP15-1Q3LI76 137 aa5.1□□□□□ -1.59
RNF4-210ENST00000508235 KRTAP4-3Q9BYR4 195 aa5.09□□□□□ -1.59
RNF4-210ENST00000508235 KRTAP4-7Q9BYR0 210 aa5.08□□□□□ -1.6
RNF4-210ENST00000508235 LCE1DQ5T752 114 aa5.06□□□□□ -1.6
RNF4-210ENST00000508235 LCE3CQ5T5A8 94 aa4.96□□□□□ -1.62
RNF4-210ENST00000508235 LCE4AQ5TA78 99 aa4.96□□□□□ -1.62
RNF4-210ENST00000508235 KRTAP4-9Q9BYQ8 210 aa4.93□□□□□ -1.62
RNF4-210ENST00000508235 KRTAP5-4Q6L8H1 288 aa4.88□□□□□ -1.63
RNF4-210ENST00000508235 PMAIP1Q13794 54 aa4.86□□□□□ -1.63
RNF4-210ENST00000508235 KRTAP4-2Q9BYR5 136 aa4.86□□□□□ -1.63
RNF4-210ENST00000508235 MT4P47944 62 aa4.82□□□□□ -1.64
RNF4-210ENST00000508235 KRTAP5-5Q701N2 237 aaPredicted RBP4.8□□□□□ -1.64
RNF4-210ENST00000508235 KRTAP4-11Q9BYQ6 195 aa4.73□□□□□ -1.65
RNF4-210ENST00000508235 PRO0628Q9UI54 55 aa4.71□□□□□ -1.66
RNF4-210ENST00000508235 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
RNF4-210ENST00000508235 SPRR5A0A1B0GTR4 108 aa4.63□□□□□ -1.67
RNF4-210ENST00000508235 HMCN1Q96RW7 5635 aa4.61□□□□□ -1.67
RNF4-210ENST00000508235 KRTAP9-6A8MVA2 160 aa4.6□□□□□ -1.67
RNF4-210ENST00000508235 KRTAP20-2Q3LI61 65 aa4.59□□□□□ -1.67
RNF4-210ENST00000508235 MT1AP04731 61 aa4.57□□□□□ -1.68
RNF4-210ENST00000508235 PRAC1Q96KF2 57 aa4.56□□□□□ -1.68
RNF4-210ENST00000508235 KRTAP6-1Q3LI64 71 aa4.5□□□□□ -1.69
RNF4-210ENST00000508235 KRTAP5-3Q6L8H2 238 aa4.49□□□□□ -1.69
RNF4-210ENST00000508235 KTN1-AS1Q86SY8 53 aa4.45□□□□□ -1.7
RNF4-210ENST00000508235 GPR98Q8WXG9 6306 aa4.42□□□□□ -1.7
RNF4-210ENST00000508235 SYNE1Q8NF91 8797 aaKnown RBP4.37□□□□□ -1.71
RNF4-210ENST00000508235 KRTAP5-10Q6L8G5 202 aa4.37□□□□□ -1.71
RNF4-210ENST00000508235 AHNAK2Q8IVF2 5795 aa4.33□□□□□ -1.72
RNF4-210ENST00000508235 KRTAP5-2Q701N4 177 aa4.32□□□□□ -1.72
RNF4-210ENST00000508235 KRTAP6-2Q3LI66 62 aa4.26□□□□□ -1.73
RNF4-210ENST00000508235 SVIPQ8NHG7 77 aa4.25□□□□□ -1.73
RNF4-210ENST00000508235 MT3P25713 68 aa4.19□□□□□ -1.74
RNF4-210ENST00000508235 KRTAP5-7Q6L8G8 165 aa4.19□□□□□ -1.74
RNF4-210ENST00000508235 H3BS24 57 aa3.98□□□□□ -1.77
RNF4-210ENST00000508235 KRTAP5-8O75690 187 aa3.97□□□□□ -1.77
RNF4-210ENST00000508235 LUZP6Q538Z0 58 aa3.93□□□□□ -1.78
RNF4-210ENST00000508235 OBSCNQ5VST9 7968 aa3.87□□□□□ -1.79
RNF4-210ENST00000508235 KRTAP5-1Q6L8H4 278 aa3.82□□□□□ -1.8
RNF4-210ENST00000508235 LCE1EQ5T753 118 aa3.8□□□□□ -1.8
RNF4-210ENST00000508235 LCE3DQ9BYE3 92 aa3.64□□□□□ -1.83
RNF4-210ENST00000508235 MUC5ACP98088 5654 aa3.52□□□□□ -1.85
RNF4-210ENST00000508235 LCE1BQ5T7P3 118 aa3.52□□□□□ -1.85
RNF4-210ENST00000508235 LCE1CQ5T751 118 aa3.51□□□□□ -1.85
RNF4-210ENST00000508235 MUC5BQ9HC84 5762 aaPredicted RBP3.48□□□□□ -1.85
RNF4-210ENST00000508235 LCE3EQ5T5B0 92 aa3.47□□□□□ -1.85
RNF4-210ENST00000508235 AHNAKQ09666 5890 aaKnown RBP3.44□□□□□ -1.86
RNF4-210ENST00000508235 NDUFAF8A1L188 74 aa3.31□□□□□ -1.88
RNF4-210ENST00000508235 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.31□□□□□ -1.88
RNF4-210ENST00000508235 KRTAP5-11Q6L8G4 156 aa3.18□□□□□ -1.9
RNF4-210ENST00000508235 LCE1FQ5T754 118 aa3.03□□□□□ -1.92
RNF4-210ENST00000508235 KRTAP21-2Q3LI59 83 aa2.96□□□□□ -1.94
RNF4-210ENST00000508235 A0A0A0MQY5 61 aa2.88□□□□□ -1.95
RNF4-210ENST00000508235 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
RNF4-210ENST00000508235 INE1O15225 51 aa2.76□□□□□ -1.97
RNF4-210ENST00000508235 PRM1P04553 51 aa2.72□□□□□ -1.97
RNF4-210ENST00000508235 PHGR1C9JFL3 82 aa2.71□□□□□ -1.98
RNF4-210ENST00000508235 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
RNF4-210ENST00000508235 KRTAP21-1Q3LI58 79 aa1.96□□□□□ -2.1
RNF4-210ENST00000508235 MUC16Q8WXI7 14507 aa1.73□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 67.9 ms