RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 MUC12Q9UKN1 5478 aa3.36□□□□□ -1.87
PDGFC-205ENST00000506880 A6NED7 52 aa3.36□□□□□ -1.87
PDGFC-205ENST00000506880 TNP1P09430 55 aa3.33□□□□□ -1.88
PDGFC-205ENST00000506880 KRTAP8-1Q8IUC2 63 aa3.33□□□□□ -1.88
PDGFC-205ENST00000506880 CDC42SE1Q9NRR8 79 aa3.32□□□□□ -1.88
PDGFC-205ENST00000506880 KRTAP10-7P60409 375 aaPredicted RBP3.31□□□□□ -1.88
PDGFC-205ENST00000506880 KRTAP5-4Q6L8H1 288 aa3.31□□□□□ -1.88
PDGFC-205ENST00000506880 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
PDGFC-205ENST00000506880 KRTAP25-1Q3LHN0 102 aa3.28□□□□□ -1.88
PDGFC-205ENST00000506880 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
PDGFC-205ENST00000506880 KMT2DO14686 5537 aa3.26□□□□□ -1.89
PDGFC-205ENST00000506880 C10orf95Q9H7T3 257 aa3.26□□□□□ -1.89
PDGFC-205ENST00000506880 KRTAP2-3P0C7H8 128 aa3.25□□□□□ -1.89
PDGFC-205ENST00000506880 SPRR2FQ96RM1 72 aa3.25□□□□□ -1.89
PDGFC-205ENST00000506880 KRTAP2-4Q9BYR9 128 aa3.25□□□□□ -1.89
PDGFC-205ENST00000506880 MDN1Q9NU22 5596 aa3.23□□□□□ -1.89
PDGFC-205ENST00000506880 LCE1AQ5T7P2 110 aa3.22□□□□□ -1.89
PDGFC-205ENST00000506880 ROMO1P60602 79 aa3.16□□□□□ -1.9
PDGFC-205ENST00000506880 PP632Q6XCG6 107 aa3.16□□□□□ -1.9
PDGFC-205ENST00000506880 SPRR2EP22531 72 aa3.15□□□□□ -1.91
PDGFC-205ENST00000506880 SPRR2BP35325 72 aa3.15□□□□□ -1.91
PDGFC-205ENST00000506880 SPRR2AP35326 72 aa3.15□□□□□ -1.91
PDGFC-205ENST00000506880 KRTAP19-7Q3SYF9 63 aa3.15□□□□□ -1.91
PDGFC-205ENST00000506880 MT1EP04732 61 aa3.13□□□□□ -1.91
PDGFC-205ENST00000506880 LCE3AQ5TA76 89 aa3.12□□□□□ -1.91
PDGFC-205ENST00000506880 KRTAP2-2Q9BYT5 123 aa3.12□□□□□ -1.91
PDGFC-205ENST00000506880 KRTAP2-1Q9BYU5 128 aa3.12□□□□□ -1.91
PDGFC-205ENST00000506880 MT1GP13640 62 aa3.1□□□□□ -1.91
PDGFC-205ENST00000506880 KRTAP19-3Q7Z4W3 81 aa3.1□□□□□ -1.91
PDGFC-205ENST00000506880 KRTAP19-5Q3LI72 72 aa3.09□□□□□ -1.91
PDGFC-205ENST00000506880 PRO0628Q9UI54 55 aa3.09□□□□□ -1.91
PDGFC-205ENST00000506880 BRK1Q8WUW1 75 aa3.08□□□□□ -1.92
PDGFC-205ENST00000506880 KRTAP12-3P60328 96 aa3.07□□□□□ -1.92
PDGFC-205ENST00000506880 SPRR2DP22532 72 aa3.06□□□□□ -1.92
PDGFC-205ENST00000506880 MT1LQ93083 61 aa3.02□□□□□ -1.93
PDGFC-205ENST00000506880 DSTQ03001 7570 aaKnown RBP3□□□□□ -1.93
PDGFC-205ENST00000506880 PMAIP1Q13794 54 aa2.95□□□□□ -1.94
PDGFC-205ENST00000506880 MT1MQ8N339 61 aa2.95□□□□□ -1.94
PDGFC-205ENST00000506880 KRTAP5-2Q701N4 177 aa2.92□□□□□ -1.94
PDGFC-205ENST00000506880 LCE3CQ5T5A8 94 aa2.85□□□□□ -1.95
PDGFC-205ENST00000506880 LCE1EQ5T753 118 aa2.84□□□□□ -1.95
PDGFC-205ENST00000506880 AHNAK2Q8IVF2 5795 aa2.82□□□□□ -1.96
PDGFC-205ENST00000506880 OBSCNQ5VST9 7968 aa2.8□□□□□ -1.96
PDGFC-205ENST00000506880 HMCN1Q96RW7 5635 aa2.79□□□□□ -1.96
PDGFC-205ENST00000506880 KTN1-AS1Q86SY8 53 aa2.78□□□□□ -1.96
PDGFC-205ENST00000506880 PRAC1Q96KF2 57 aa2.77□□□□□ -1.97
PDGFC-205ENST00000506880 KRTAP4-3Q9BYR4 195 aa2.75□□□□□ -1.97
PDGFC-205ENST00000506880 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
PDGFC-205ENST00000506880 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.98
PDGFC-205ENST00000506880 SPRR5A0A1B0GTR4 108 aa2.7□□□□□ -1.98
PDGFC-205ENST00000506880 MT3P25713 68 aa2.7□□□□□ -1.98
PDGFC-205ENST00000506880 KRTAP5-7Q6L8G8 165 aa2.67□□□□□ -1.98
PDGFC-205ENST00000506880 KRTAP12-4P60329 112 aa2.66□□□□□ -1.98
PDGFC-205ENST00000506880 MT1AP04731 61 aa2.61□□□□□ -1.99
PDGFC-205ENST00000506880 MT4P47944 62 aa2.61□□□□□ -1.99
PDGFC-205ENST00000506880 KRTAP9-6A8MVA2 160 aa2.58□□□□□ -2
PDGFC-205ENST00000506880 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
PDGFC-205ENST00000506880 KRTAP20-2Q3LI61 65 aa2.55□□□□□ -2
PDGFC-205ENST00000506880 NDUFAF8A1L188 74 aa2.54□□□□□ -2
PDGFC-205ENST00000506880 KRTAP5-8O75690 187 aa2.54□□□□□ -2
PDGFC-205ENST00000506880 LUZP6Q538Z0 58 aa2.54□□□□□ -2
PDGFC-205ENST00000506880 SYNE1Q8NF91 8797 aaKnown RBP2.5□□□□□ -2.01
PDGFC-205ENST00000506880 KRTAP6-1Q3LI64 71 aa2.5□□□□□ -2.01
PDGFC-205ENST00000506880 MUC5ACP98088 5654 aa2.43□□□□□ -2.02
PDGFC-205ENST00000506880 MUC5BQ9HC84 5762 aaPredicted RBP2.41□□□□□ -2.02
PDGFC-205ENST00000506880 LCE1FQ5T754 118 aa2.38□□□□□ -2.03
PDGFC-205ENST00000506880 KRTAP6-2Q3LI66 62 aa2.35□□□□□ -2.03
PDGFC-205ENST00000506880 LCE3DQ9BYE3 92 aa2.11□□□□□ -2.07
PDGFC-205ENST00000506880 LCE3EQ5T5B0 92 aa2.06□□□□□ -2.08
PDGFC-205ENST00000506880 LCE1CQ5T751 118 aa2.04□□□□□ -2.08
PDGFC-205ENST00000506880 LCE1BQ5T7P3 118 aa2.04□□□□□ -2.08
PDGFC-205ENST00000506880 INE1O15225 51 aa1.97□□□□□ -2.09
PDGFC-205ENST00000506880 KRTAP21-2Q3LI59 83 aa1.67□□□□□ -2.14
PDGFC-205ENST00000506880 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
PDGFC-205ENST00000506880 MUC19Q7Z5P9 8384 aa1.63□□□□□ -2.15
PDGFC-205ENST00000506880 PRM1P04553 51 aa1.56□□□□□ -2.16
PDGFC-205ENST00000506880 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
PDGFC-205ENST00000506880 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 37.8 ms