RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 KRTAP19-5Q3LI72 72 aa6.23□□□□□ -1.41
SYNE4-207ENST00000505054 LCE3AQ5TA76 89 aa6.23□□□□□ -1.41
SYNE4-207ENST00000505054 KRTAP4-9Q9BYQ8 210 aa6.21□□□□□ -1.42
SYNE4-207ENST00000505054 LCE5AQ5TCM9 118 aa6.17□□□□□ -1.42
SYNE4-207ENST00000505054 KRTAP19-3Q7Z4W3 81 aa6.12□□□□□ -1.43
SYNE4-207ENST00000505054 KRTAP25-1Q3LHN0 102 aa6.11□□□□□ -1.43
SYNE4-207ENST00000505054 CDC42SE1Q9NRR8 79 aa6.09□□□□□ -1.43
SYNE4-207ENST00000505054 LCE1DQ5T752 114 aa6.06□□□□□ -1.44
SYNE4-207ENST00000505054 MT1LQ93083 61 aa6.02□□□□□ -1.45
SYNE4-207ENST00000505054 MT1GP13640 62 aa5.99□□□□□ -1.45
SYNE4-207ENST00000505054 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
SYNE4-207ENST00000505054 LCE4AQ5TA78 99 aa5.96□□□□□ -1.46
SYNE4-207ENST00000505054 HMCN1Q96RW7 5635 aa5.96□□□□□ -1.46
SYNE4-207ENST00000505054 MT4P47944 62 aa5.93□□□□□ -1.46
SYNE4-207ENST00000505054 ROMO1P60602 79 aa5.93□□□□□ -1.46
SYNE4-207ENST00000505054 MT1MQ8N339 61 aa5.93□□□□□ -1.46
SYNE4-207ENST00000505054 PP632Q6XCG6 107 aa5.92□□□□□ -1.46
SYNE4-207ENST00000505054 KRTAP23-1A1A580 65 aa5.89□□□□□ -1.47
SYNE4-207ENST00000505054 AHNAK2Q8IVF2 5795 aa5.87□□□□□ -1.47
SYNE4-207ENST00000505054 KRTAP5-10Q6L8G5 202 aa5.83□□□□□ -1.48
SYNE4-207ENST00000505054 KRTAP4-3Q9BYR4 195 aa5.79□□□□□ -1.48
SYNE4-207ENST00000505054 KRTAP5-4Q6L8H1 288 aa5.78□□□□□ -1.48
SYNE4-207ENST00000505054 KRTAP4-7Q9BYR0 210 aa5.76□□□□□ -1.49
SYNE4-207ENST00000505054 BRK1Q8WUW1 75 aa5.73□□□□□ -1.49
SYNE4-207ENST00000505054 KRTAP4-6Q9BYQ5 205 aa5.71□□□□□ -1.5
SYNE4-207ENST00000505054 KRTAP15-1Q3LI76 137 aa5.67□□□□□ -1.5
SYNE4-207ENST00000505054 KRTAP5-7Q6L8G8 165 aa5.66□□□□□ -1.5
SYNE4-207ENST00000505054 KRTAP19-4Q3LI73 84 aa5.61□□□□□ -1.51
SYNE4-207ENST00000505054 KRTAP5-3Q6L8H2 238 aa5.6□□□□□ -1.51
SYNE4-207ENST00000505054 LCE3CQ5T5A8 94 aa5.53□□□□□ -1.52
SYNE4-207ENST00000505054 KRTAP20-2Q3LI61 65 aa5.48□□□□□ -1.53
SYNE4-207ENST00000505054 LOC100996750A0A140TA64 210 aa5.43□□□□□ -1.54
SYNE4-207ENST00000505054 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
SYNE4-207ENST00000505054 KRTAP5-5Q701N2 237 aaPredicted RBP5.42□□□□□ -1.54
SYNE4-207ENST00000505054 PMAIP1Q13794 54 aa5.38□□□□□ -1.55
SYNE4-207ENST00000505054 KRTAP12-4P60329 112 aa5.32□□□□□ -1.56
SYNE4-207ENST00000505054 KRTAP9-6A8MVA2 160 aa5.26□□□□□ -1.57
SYNE4-207ENST00000505054 PRO0628Q9UI54 55 aa5.23□□□□□ -1.57
SYNE4-207ENST00000505054 PRAC1Q96KF2 57 aa5.18□□□□□ -1.58
SYNE4-207ENST00000505054 SYNE1Q8NF91 8797 aaKnown RBP5.13□□□□□ -1.59
SYNE4-207ENST00000505054 MT1AP04731 61 aa5.12□□□□□ -1.59
SYNE4-207ENST00000505054 KRTAP6-1Q3LI64 71 aa5.08□□□□□ -1.6
SYNE4-207ENST00000505054 KRTAP4-11Q9BYQ6 195 aa5.08□□□□□ -1.6
SYNE4-207ENST00000505054 KRTAP5-2Q701N4 177 aa4.99□□□□□ -1.61
SYNE4-207ENST00000505054 KTN1-AS1Q86SY8 53 aa4.95□□□□□ -1.62
SYNE4-207ENST00000505054 KRTAP5-8O75690 187 aa4.93□□□□□ -1.62
SYNE4-207ENST00000505054 MUC5ACP98088 5654 aa4.91□□□□□ -1.62
SYNE4-207ENST00000505054 AHNAKQ09666 5890 aaKnown RBP4.91□□□□□ -1.62
SYNE4-207ENST00000505054 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.63
SYNE4-207ENST00000505054 MUC5BQ9HC84 5762 aaPredicted RBP4.88□□□□□ -1.63
SYNE4-207ENST00000505054 SVIPQ8NHG7 77 aa4.83□□□□□ -1.64
SYNE4-207ENST00000505054 KRTAP6-2Q3LI66 62 aa4.79□□□□□ -1.64
SYNE4-207ENST00000505054 KRTAP9-9Q9BYP9 154 aa4.74□□□□□ -1.65
SYNE4-207ENST00000505054 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
SYNE4-207ENST00000505054 MT3P25713 68 aa4.64□□□□□ -1.67
SYNE4-207ENST00000505054 KRTAP5-1Q6L8H4 278 aa4.54□□□□□ -1.68
SYNE4-207ENST00000505054 LUZP6Q538Z0 58 aa4.25□□□□□ -1.73
SYNE4-207ENST00000505054 LCE1EQ5T753 118 aa4.21□□□□□ -1.74
SYNE4-207ENST00000505054 LCE3DQ9BYE3 92 aa4.03□□□□□ -1.76
SYNE4-207ENST00000505054 KRTAP4-2Q9BYR5 136 aa4.02□□□□□ -1.77
SYNE4-207ENST00000505054 LCE1BQ5T7P3 118 aa3.97□□□□□ -1.77
SYNE4-207ENST00000505054 LCE1CQ5T751 118 aa3.91□□□□□ -1.78
SYNE4-207ENST00000505054 LCE3EQ5T5B0 92 aa3.84□□□□□ -1.79
SYNE4-207ENST00000505054 KRTAP4-12Q9BQ66 201 aa3.75□□□□□ -1.81
SYNE4-207ENST00000505054 NDUFAF8A1L188 74 aa3.71□□□□□ -1.82
SYNE4-207ENST00000505054 KRTAP5-11Q6L8G4 156 aa3.6□□□□□ -1.83
SYNE4-207ENST00000505054 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.6□□□□□ -1.83
SYNE4-207ENST00000505054 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
SYNE4-207ENST00000505054 PHGR1C9JFL3 82 aa3.41□□□□□ -1.86
SYNE4-207ENST00000505054 H3BS24 57 aa3.38□□□□□ -1.87
SYNE4-207ENST00000505054 KRTAP21-2Q3LI59 83 aa3.35□□□□□ -1.87
SYNE4-207ENST00000505054 A0A0A0MQY5 61 aa3.26□□□□□ -1.89
SYNE4-207ENST00000505054 PRM1P04553 51 aa3.06□□□□□ -1.92
SYNE4-207ENST00000505054 KRTAP4-4Q9BYR3 166 aa3.02□□□□□ -1.93
SYNE4-207ENST00000505054 INE1O15225 51 aa3□□□□□ -1.93
SYNE4-207ENST00000505054 MUC19Q7Z5P9 8384 aa2.89□□□□□ -1.95
SYNE4-207ENST00000505054 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
SYNE4-207ENST00000505054 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 45.6 ms