RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 KRTAP8-1Q8IUC2 63 aa3.28□□□□□ -1.88
SF3A1-210ENST00000498259 SSPOA2VEC9 5147 aa3.28□□□□□ -1.88
SF3A1-210ENST00000498259 CRCT1Q9UGL9 99 aa3.26□□□□□ -1.89
SF3A1-210ENST00000498259 FSIP2Q5CZC0 6907 aa3.26□□□□□ -1.89
SF3A1-210ENST00000498259 KRTAP12-3P60328 96 aa3.22□□□□□ -1.89
SF3A1-210ENST00000498259 FCGBPQ9Y6R7 5405 aaPredicted RBP3.15□□□□□ -1.91
SF3A1-210ENST00000498259 KRTAP19-5Q3LI72 72 aa3.14□□□□□ -1.91
SF3A1-210ENST00000498259 A0A0A0MQY5 61 aa3.1□□□□□ -1.91
SF3A1-210ENST00000498259 KRTAP19-7Q3SYF9 63 aa3.08□□□□□ -1.92
SF3A1-210ENST00000498259 LUZP6Q538Z0 58 aa3.06□□□□□ -1.92
SF3A1-210ENST00000498259 MT1EP04732 61 aa3.05□□□□□ -1.92
SF3A1-210ENST00000498259 SPRR2FQ96RM1 72 aa3.03□□□□□ -1.92
SF3A1-210ENST00000498259 KMT2DO14686 5537 aa3.03□□□□□ -1.93
SF3A1-210ENST00000498259 KRTAP5-9P26371 169 aa3□□□□□ -1.93
SF3A1-210ENST00000498259 LCE3CQ5T5A8 94 aa3□□□□□ -1.93
SF3A1-210ENST00000498259 MT1GP13640 62 aa2.99□□□□□ -1.93
SF3A1-210ENST00000498259 MT1LQ93083 61 aa2.99□□□□□ -1.93
SF3A1-210ENST00000498259 MACF1Q9UPN3 7388 aaKnown RBP2.98□□□□□ -1.93
SF3A1-210ENST00000498259 SPRR5A0A1B0GTR4 108 aa2.97□□□□□ -1.93
SF3A1-210ENST00000498259 KRTAP6-3Q3LI67 103 aa2.97□□□□□ -1.93
SF3A1-210ENST00000498259 KRTAP19-3Q7Z4W3 81 aa2.97□□□□□ -1.93
SF3A1-210ENST00000498259 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.92□□□□□ -1.94
SF3A1-210ENST00000498259 LCE1AQ5T7P2 110 aa2.89□□□□□ -1.95
SF3A1-210ENST00000498259 SYNE2Q8WXH0 6885 aaKnown RBP2.88□□□□□ -1.95
SF3A1-210ENST00000498259 SPRR2EP22531 72 aa2.88□□□□□ -1.95
SF3A1-210ENST00000498259 SPRR2BP35325 72 aa2.88□□□□□ -1.95
SF3A1-210ENST00000498259 SPRR2AP35326 72 aa2.88□□□□□ -1.95
SF3A1-210ENST00000498259 MT1MQ8N339 61 aa2.88□□□□□ -1.95
SF3A1-210ENST00000498259 NDUFAF8A1L188 74 aa2.83□□□□□ -1.96
SF3A1-210ENST00000498259 MUC12Q9UKN1 5478 aa2.82□□□□□ -1.96
SF3A1-210ENST00000498259 SPRR2DP22532 72 aa2.79□□□□□ -1.96
SF3A1-210ENST00000498259 MDN1Q9NU22 5596 aa2.77□□□□□ -1.97
SF3A1-210ENST00000498259 KRTAP4-3Q9BYR4 195 aa2.72□□□□□ -1.97
SF3A1-210ENST00000498259 KRTAP9-6A8MVA2 160 aa2.71□□□□□ -1.98
SF3A1-210ENST00000498259 KRTAP2-2Q9BYT5 123 aa2.66□□□□□ -1.98
SF3A1-210ENST00000498259 NEBP20929 6669 aa2.65□□□□□ -1.99
SF3A1-210ENST00000498259 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
SF3A1-210ENST00000498259 KRTAP2-3P0C7H8 128 aa2.62□□□□□ -1.99
SF3A1-210ENST00000498259 KRTAP2-4Q9BYR9 128 aa2.62□□□□□ -1.99
SF3A1-210ENST00000498259 DSTQ03001 7570 aaKnown RBP2.6□□□□□ -1.99
SF3A1-210ENST00000498259 KRTAP20-1Q3LI63 56 aa2.6□□□□□ -1.99
SF3A1-210ENST00000498259 KRTAP2-1Q9BYU5 128 aa2.59□□□□□ -1.99
SF3A1-210ENST00000498259 MT1AP04731 61 aa2.58□□□□□ -2
SF3A1-210ENST00000498259 KRTAP5-5Q701N2 237 aaPredicted RBP2.58□□□□□ -2
SF3A1-210ENST00000498259 MT3P25713 68 aa2.56□□□□□ -2
SF3A1-210ENST00000498259 KRTAP12-4P60329 112 aa2.53□□□□□ -2
SF3A1-210ENST00000498259 KRTAP6-1Q3LI64 71 aa2.49□□□□□ -2.01
SF3A1-210ENST00000498259 KRTAP5-4Q6L8H1 288 aa2.49□□□□□ -2.01
SF3A1-210ENST00000498259 KRTAP5-1Q6L8H4 278 aa2.48□□□□□ -2.01
SF3A1-210ENST00000498259 INE1O15225 51 aa2.45□□□□□ -2.02
SF3A1-210ENST00000498259 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
SF3A1-210ENST00000498259 KRTAP4-4Q9BYR3 166 aa2.42□□□□□ -2.02
SF3A1-210ENST00000498259 MT4P47944 62 aa2.38□□□□□ -2.03
SF3A1-210ENST00000498259 LCE1EQ5T753 118 aa2.35□□□□□ -2.03
SF3A1-210ENST00000498259 SYNE1Q8NF91 8797 aaKnown RBP2.33□□□□□ -2.04
SF3A1-210ENST00000498259 GPR98Q8WXG9 6306 aa2.32□□□□□ -2.04
SF3A1-210ENST00000498259 KRTAP20-2Q3LI61 65 aa2.32□□□□□ -2.04
SF3A1-210ENST00000498259 KRTAP6-2Q3LI66 62 aa2.32□□□□□ -2.04
SF3A1-210ENST00000498259 LCE3DQ9BYE3 92 aa2.29□□□□□ -2.04
SF3A1-210ENST00000498259 KRTAP5-2Q701N4 177 aa2.25□□□□□ -2.05
SF3A1-210ENST00000498259 HMCN1Q96RW7 5635 aa2.24□□□□□ -2.05
SF3A1-210ENST00000498259 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
SF3A1-210ENST00000498259 OBSCNQ5VST9 7968 aa2.13□□□□□ -2.07
SF3A1-210ENST00000498259 KRTAP5-10Q6L8G5 202 aa2.07□□□□□ -2.08
SF3A1-210ENST00000498259 AHNAK2Q8IVF2 5795 aa2.07□□□□□ -2.08
SF3A1-210ENST00000498259 KRTAP5-7Q6L8G8 165 aa2.02□□□□□ -2.09
SF3A1-210ENST00000498259 KRTAP5-8O75690 187 aa1.93□□□□□ -2.1
SF3A1-210ENST00000498259 LCE1CQ5T751 118 aa1.92□□□□□ -2.1
SF3A1-210ENST00000498259 LCE1BQ5T7P3 118 aa1.92□□□□□ -2.1
SF3A1-210ENST00000498259 PRM1P04553 51 aa1.88□□□□□ -2.11
SF3A1-210ENST00000498259 MUC5ACP98088 5654 aa1.78□□□□□ -2.12
SF3A1-210ENST00000498259 AHNAKQ09666 5890 aaKnown RBP1.77□□□□□ -2.13
SF3A1-210ENST00000498259 MUC5BQ9HC84 5762 aaPredicted RBP1.76□□□□□ -2.13
SF3A1-210ENST00000498259 KRTAP21-2Q3LI59 83 aa1.63□□□□□ -2.15
SF3A1-210ENST00000498259 PHGR1C9JFL3 82 aa1.43□□□□□ -2.18
SF3A1-210ENST00000498259 MUC19Q7Z5P9 8384 aa1.34□□□□□ -2.2
SF3A1-210ENST00000498259 KRTAP21-1Q3LI58 79 aa1.15□□□□□ -2.23
SF3A1-210ENST00000498259 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 8.3 ms