RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 SPRR2BP35325 72 aa6.27□□□□□ -1.41
CBX4-204ENST00000495122 SPRR2AP35326 72 aa6.27□□□□□ -1.41
CBX4-204ENST00000495122 KRTAP12-3P60328 96 aa6.2□□□□□ -1.42
CBX4-204ENST00000495122 LCE1AQ5T7P2 110 aa6.18□□□□□ -1.42
CBX4-204ENST00000495122 KRTAP4-8A0A0G2JLE6 195 aa6.15□□□□□ -1.42
CBX4-204ENST00000495122 KRTAP4-8Q9BYQ9 185 aa6.15□□□□□ -1.42
CBX4-204ENST00000495122 SPRR5A0A1B0GTR4 108 aa6.13□□□□□ -1.43
CBX4-204ENST00000495122 KRTAP2-2Q9BYT5 123 aa6.1□□□□□ -1.43
CBX4-204ENST00000495122 KRTAP2-1Q9BYU5 128 aa6.1□□□□□ -1.43
CBX4-204ENST00000495122 SPRR2DP22532 72 aa6.06□□□□□ -1.44
CBX4-204ENST00000495122 LUZP6Q538Z0 58 aa6.06□□□□□ -1.44
CBX4-204ENST00000495122 KRTAP19-4Q3LI73 84 aa6.03□□□□□ -1.44
CBX4-204ENST00000495122 KRTAP19-5Q3LI72 72 aa6.02□□□□□ -1.45
CBX4-204ENST00000495122 NDUFAF8A1L188 74 aa5.96□□□□□ -1.46
CBX4-204ENST00000495122 KRTAP19-7Q3SYF9 63 aa5.91□□□□□ -1.46
CBX4-204ENST00000495122 LCE3BQ5TA77 95 aa5.91□□□□□ -1.46
CBX4-204ENST00000495122 LCE3CQ5T5A8 94 aa5.82□□□□□ -1.48
CBX4-204ENST00000495122 MT1EP04732 61 aa5.81□□□□□ -1.48
CBX4-204ENST00000495122 GPR98Q8WXG9 6306 aa5.74□□□□□ -1.49
CBX4-204ENST00000495122 MT1LQ93083 61 aa5.73□□□□□ -1.49
CBX4-204ENST00000495122 DSTQ03001 7570 aaKnown RBP5.72□□□□□ -1.49
CBX4-204ENST00000495122 LCE5AQ5TCM9 118 aa5.69□□□□□ -1.5
CBX4-204ENST00000495122 KRTAP19-3Q7Z4W3 81 aa5.65□□□□□ -1.5
CBX4-204ENST00000495122 H3BS24 57 aa5.63□□□□□ -1.51
CBX4-204ENST00000495122 KRTAP4-9Q9BYQ8 210 aa5.58□□□□□ -1.52
CBX4-204ENST00000495122 MT1GP13640 62 aa5.57□□□□□ -1.52
CBX4-204ENST00000495122 MT1MQ8N339 61 aa5.46□□□□□ -1.54
CBX4-204ENST00000495122 A0A0A0MQY5 61 aa5.44□□□□□ -1.54
CBX4-204ENST00000495122 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
CBX4-204ENST00000495122 KRTAP9-6A8MVA2 160 aa5.41□□□□□ -1.54
CBX4-204ENST00000495122 LCE1DQ5T752 114 aa5.41□□□□□ -1.54
CBX4-204ENST00000495122 LCE4AQ5TA78 99 aa5.35□□□□□ -1.55
CBX4-204ENST00000495122 HMCN1Q96RW7 5635 aa5.34□□□□□ -1.55
CBX4-204ENST00000495122 MT4P47944 62 aa5.3□□□□□ -1.56
CBX4-204ENST00000495122 KRTAP4-3Q9BYR4 195 aa5.29□□□□□ -1.56
CBX4-204ENST00000495122 KRTAP5-4Q6L8H1 288 aa5.25□□□□□ -1.57
CBX4-204ENST00000495122 AHNAK2Q8IVF2 5795 aa5.23□□□□□ -1.57
CBX4-204ENST00000495122 KRTAP5-10Q6L8G5 202 aa5.21□□□□□ -1.58
CBX4-204ENST00000495122 KRTAP4-6Q9BYQ5 205 aa5.14□□□□□ -1.59
CBX4-204ENST00000495122 LOC100996750A0A140TA64 210 aa5.1□□□□□ -1.59
CBX4-204ENST00000495122 INE1O15225 51 aa5.1□□□□□ -1.59
CBX4-204ENST00000495122 KRTAP5-7Q6L8G8 165 aa5.03□□□□□ -1.6
CBX4-204ENST00000495122 KRTAP5-3Q6L8H2 238 aa5□□□□□ -1.61
CBX4-204ENST00000495122 KRTAP5-5Q701N2 237 aaPredicted RBP4.99□□□□□ -1.61
CBX4-204ENST00000495122 KRTAP20-2Q3LI61 65 aa4.96□□□□□ -1.62
CBX4-204ENST00000495122 MT1AP04731 61 aa4.92□□□□□ -1.62
CBX4-204ENST00000495122 KRTAP12-4P60329 112 aa4.84□□□□□ -1.63
CBX4-204ENST00000495122 SYNE1Q8NF91 8797 aaKnown RBP4.81□□□□□ -1.64
CBX4-204ENST00000495122 KRTAP6-1Q3LI64 71 aa4.78□□□□□ -1.64
CBX4-204ENST00000495122 KRTAP9-4Q9BYQ2 154 aa4.63□□□□□ -1.67
CBX4-204ENST00000495122 KRTAP5-2Q701N4 177 aa4.6□□□□□ -1.67
CBX4-204ENST00000495122 KRTAP4-11Q9BYQ6 195 aa4.54□□□□□ -1.68
CBX4-204ENST00000495122 MT3P25713 68 aa4.46□□□□□ -1.7
CBX4-204ENST00000495122 KRTAP5-8O75690 187 aa4.42□□□□□ -1.7
CBX4-204ENST00000495122 LCE3DQ9BYE3 92 aa4.41□□□□□ -1.7
CBX4-204ENST00000495122 MUC5ACP98088 5654 aa4.4□□□□□ -1.71
CBX4-204ENST00000495122 KRTAP6-2Q3LI66 62 aa4.39□□□□□ -1.71
CBX4-204ENST00000495122 AHNAKQ09666 5890 aaKnown RBP4.35□□□□□ -1.71
CBX4-204ENST00000495122 OBSCNQ5VST9 7968 aa4.34□□□□□ -1.71
CBX4-204ENST00000495122 MUC5BQ9HC84 5762 aaPredicted RBP4.34□□□□□ -1.71
CBX4-204ENST00000495122 LCE3EQ5T5B0 92 aa4.33□□□□□ -1.72
CBX4-204ENST00000495122 KRTAP9-9Q9BYP9 154 aa4.18□□□□□ -1.74
CBX4-204ENST00000495122 KRTAP4-12Q9BQ66 201 aa4.15□□□□□ -1.75
CBX4-204ENST00000495122 KRTAP5-1Q6L8H4 278 aa4.12□□□□□ -1.75
CBX4-204ENST00000495122 LCE1EQ5T753 118 aa3.89□□□□□ -1.79
CBX4-204ENST00000495122 PRM1P04553 51 aa3.82□□□□□ -1.8
CBX4-204ENST00000495122 KRTAP4-2Q9BYR5 136 aa3.71□□□□□ -1.82
CBX4-204ENST00000495122 LCE1BQ5T7P3 118 aa3.65□□□□□ -1.83
CBX4-204ENST00000495122 LCE1CQ5T751 118 aa3.61□□□□□ -1.83
CBX4-204ENST00000495122 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.4□□□□□ -1.87
CBX4-204ENST00000495122 KRTAP5-11Q6L8G4 156 aa3.3□□□□□ -1.88
CBX4-204ENST00000495122 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
CBX4-204ENST00000495122 KRTAP21-2Q3LI59 83 aa3.15□□□□□ -1.91
CBX4-204ENST00000495122 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
CBX4-204ENST00000495122 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
CBX4-204ENST00000495122 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
CBX4-204ENST00000495122 KRTAP21-1Q3LI58 79 aa2.43□□□□□ -2.02
CBX4-204ENST00000495122 MUC16Q8WXI7 14507 aa1.9□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 97.1 ms