RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 A0A0D9SG42 100 aa3.66□□□□□ -1.82
MSH5-218ENST00000494646 COA5Q86WW8 74 aa3.66□□□□□ -1.82
MSH5-218ENST00000494646 ROMO1P60602 79 aa3.64□□□□□ -1.83
MSH5-218ENST00000494646 SERP1Q9Y6X1 66 aa3.64□□□□□ -1.83
MSH5-218ENST00000494646 SPATA8Q6RVD6 105 aa3.63□□□□□ -1.83
MSH5-218ENST00000494646 SPINT4Q6UDR6 99 aa3.62□□□□□ -1.83
MSH5-218ENST00000494646 KRTAP19-7Q3SYF9 63 aa3.6□□□□□ -1.83
MSH5-218ENST00000494646 COX7CP15954 63 aa3.57□□□□□ -1.84
MSH5-218ENST00000494646 MT1EP04732 61 aa3.56□□□□□ -1.84
MSH5-218ENST00000494646 CYSTM1Q9H1C7 97 aa3.56□□□□□ -1.84
MSH5-218ENST00000494646 LCE1DQ5T752 114 aa3.55□□□□□ -1.84
MSH5-218ENST00000494646 KRTAP19-3Q7Z4W3 81 aa3.55□□□□□ -1.84
MSH5-218ENST00000494646 KRTAP12-1P59990 96 aa3.54□□□□□ -1.84
MSH5-218ENST00000494646 H7BZZ5 65 aa3.53□□□□□ -1.84
MSH5-218ENST00000494646 KRTAP19-5Q3LI72 72 aa3.52□□□□□ -1.85
MSH5-218ENST00000494646 KRTAP4-9Q9BYQ8 210 aa3.51□□□□□ -1.85
MSH5-218ENST00000494646 A0A1B0GU69 56 aa3.48□□□□□ -1.85
MSH5-218ENST00000494646 A8MU10 97 aa3.48□□□□□ -1.85
MSH5-218ENST00000494646 GPR98Q8WXG9 6306 aa3.47□□□□□ -1.85
MSH5-218ENST00000494646 MT1GP13640 62 aa3.46□□□□□ -1.86
MSH5-218ENST00000494646 MIR22HGQ0VDD5 57 aa3.42□□□□□ -1.86
MSH5-218ENST00000494646 HMCN1Q96RW7 5635 aa3.42□□□□□ -1.86
MSH5-218ENST00000494646 PP632Q6XCG6 107 aa3.41□□□□□ -1.86
MSH5-218ENST00000494646 MT1MQ8N339 61 aa3.41□□□□□ -1.86
MSH5-218ENST00000494646 C10orf95Q9H7T3 257 aa3.41□□□□□ -1.86
MSH5-218ENST00000494646 LCE1FQ5T754 118 aa3.4□□□□□ -1.87
MSH5-218ENST00000494646 LCE3AQ5TA76 89 aa3.4□□□□□ -1.87
MSH5-218ENST00000494646 MT1LQ93083 61 aa3.4□□□□□ -1.87
MSH5-218ENST00000494646 TNP1P09430 55 aa3.39□□□□□ -1.87
MSH5-218ENST00000494646 KRTAP4-3Q9BYR4 195 aa3.38□□□□□ -1.87
MSH5-218ENST00000494646 MT4P47944 62 aa3.36□□□□□ -1.87
MSH5-218ENST00000494646 Q1T7F1 81 aa3.35□□□□□ -1.87
MSH5-218ENST00000494646 ATP5EP56381 51 aaPredicted RBP3.34□□□□□ -1.87
MSH5-218ENST00000494646 PRR15LQ9BU68 103 aa3.34□□□□□ -1.87
MSH5-218ENST00000494646 KRTAP4-11Q9BYQ6 195 aa3.33□□□□□ -1.88
MSH5-218ENST00000494646 AHNAK2Q8IVF2 5795 aa3.33□□□□□ -1.88
MSH5-218ENST00000494646 LINC01558Q9Y6Z2 57 aa3.3□□□□□ -1.88
MSH5-218ENST00000494646 KRTAP4-7Q9BYR0 210 aa3.29□□□□□ -1.88
MSH5-218ENST00000494646 KRTAP12-3P60328 96 aa3.26□□□□□ -1.89
MSH5-218ENST00000494646 KRTAP5-4Q6L8H1 288 aa3.25□□□□□ -1.89
MSH5-218ENST00000494646 UQCR11O14957 56 aa3.24□□□□□ -1.89
MSH5-218ENST00000494646 CDC42SE1Q9NRR8 79 aa3.21□□□□□ -1.9
MSH5-218ENST00000494646 SYNE1Q8NF91 8797 aaKnown RBP3.17□□□□□ -1.9
MSH5-218ENST00000494646 KRTAP5-10Q6L8G5 202 aa3.15□□□□□ -1.91
MSH5-218ENST00000494646 LCE3CQ5T5A8 94 aa3.11□□□□□ -1.91
MSH5-218ENST00000494646 KRTAP5-5Q701N2 237 aaPredicted RBP3.11□□□□□ -1.91
MSH5-218ENST00000494646 KRTAP20-2Q3LI61 65 aa3.1□□□□□ -1.91
MSH5-218ENST00000494646 KRTAP4-2Q9BYR5 136 aa3.09□□□□□ -1.91
MSH5-218ENST00000494646 KRTAP5-3Q6L8H2 238 aa3.08□□□□□ -1.92
MSH5-218ENST00000494646 KRTAP12-4P60329 112 aa3.06□□□□□ -1.92
MSH5-218ENST00000494646 SPRR5A0A1B0GTR4 108 aa3.05□□□□□ -1.92
MSH5-218ENST00000494646 INE1O15225 51 aa3.03□□□□□ -1.92
MSH5-218ENST00000494646 KRTAP5-7Q6L8G8 165 aa3.01□□□□□ -1.93
MSH5-218ENST00000494646 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
MSH5-218ENST00000494646 MT1AP04731 61 aa2.88□□□□□ -1.95
MSH5-218ENST00000494646 OBSCNQ5VST9 7968 aa2.85□□□□□ -1.95
MSH5-218ENST00000494646 KRTAP9-6A8MVA2 160 aa2.84□□□□□ -1.95
MSH5-218ENST00000494646 LCE3EQ5T5B0 92 aa2.84□□□□□ -1.95
MSH5-218ENST00000494646 KRTAP5-2Q701N4 177 aa2.84□□□□□ -1.95
MSH5-218ENST00000494646 KRTAP6-2Q3LI66 62 aa2.78□□□□□ -1.96
MSH5-218ENST00000494646 MUC5BQ9HC84 5762 aaPredicted RBP2.76□□□□□ -1.97
MSH5-218ENST00000494646 AHNAKQ09666 5890 aaKnown RBP2.76□□□□□ -1.97
MSH5-218ENST00000494646 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
MSH5-218ENST00000494646 MUC5ACP98088 5654 aa2.71□□□□□ -1.98
MSH5-218ENST00000494646 LCE1EQ5T753 118 aa2.7□□□□□ -1.98
MSH5-218ENST00000494646 KRTAP5-1Q6L8H4 278 aa2.57□□□□□ -2
MSH5-218ENST00000494646 LCE3DQ9BYE3 92 aa2.53□□□□□ -2
MSH5-218ENST00000494646 LCE1BQ5T7P3 118 aa2.35□□□□□ -2.03
MSH5-218ENST00000494646 LCE1CQ5T751 118 aa2.25□□□□□ -2.05
MSH5-218ENST00000494646 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
MSH5-218ENST00000494646 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.02□□□□□ -2.09
MSH5-218ENST00000494646 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.11
MSH5-218ENST00000494646 PHGR1C9JFL3 82 aa1.86□□□□□ -2.11
MSH5-218ENST00000494646 KRTAP4-4Q9BYR3 166 aa1.81□□□□□ -2.12
MSH5-218ENST00000494646 MUC19Q7Z5P9 8384 aa1.76□□□□□ -2.13
MSH5-218ENST00000494646 PRM1P04553 51 aa1.49□□□□□ -2.17
MSH5-218ENST00000494646 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
MSH5-218ENST00000494646 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 138.3 ms