RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 MT1XP80297 61 aa4.54□□□□□ -1.68
RFC4-214ENST00000494047 KRTAP12-3P60328 96 aa4.53□□□□□ -1.69
RFC4-214ENST00000494047 LCE1DQ5T752 114 aa4.53□□□□□ -1.69
RFC4-214ENST00000494047 LCE4AQ5TA78 99 aa4.51□□□□□ -1.69
RFC4-214ENST00000494047 KRTAP19-4Q3LI73 84 aa4.49□□□□□ -1.69
RFC4-214ENST00000494047 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
RFC4-214ENST00000494047 INE1O15225 51 aa4.47□□□□□ -1.69
RFC4-214ENST00000494047 NEBP20929 6669 aa4.41□□□□□ -1.7
RFC4-214ENST00000494047 KRTAP4-9Q9BYQ8 210 aa4.4□□□□□ -1.71
RFC4-214ENST00000494047 KRTAP6-3Q3LI67 103 aa4.39□□□□□ -1.71
RFC4-214ENST00000494047 KRTAP10-7P60409 375 aaPredicted RBP4.33□□□□□ -1.72
RFC4-214ENST00000494047 KRTAP20-1Q3LI63 56 aa4.31□□□□□ -1.72
RFC4-214ENST00000494047 KRTAP4-2Q9BYR5 136 aa4.3□□□□□ -1.72
RFC4-214ENST00000494047 MUC12Q9UKN1 5478 aa4.3□□□□□ -1.72
RFC4-214ENST00000494047 LCE3CQ5T5A8 94 aa4.26□□□□□ -1.73
RFC4-214ENST00000494047 KRTAP4-11Q9BYQ6 195 aa4.26□□□□□ -1.73
RFC4-214ENST00000494047 LCE5AQ5TCM9 118 aa4.22□□□□□ -1.73
RFC4-214ENST00000494047 KRTAP19-5Q3LI72 72 aa4.21□□□□□ -1.74
RFC4-214ENST00000494047 KRTAP5-9P26371 169 aa4.2□□□□□ -1.74
RFC4-214ENST00000494047 KMT2DO14686 5537 aa4.13□□□□□ -1.75
RFC4-214ENST00000494047 MDN1Q9NU22 5596 aa4.12□□□□□ -1.75
RFC4-214ENST00000494047 KRTAP2-3P0C7H8 128 aa4.06□□□□□ -1.76
RFC4-214ENST00000494047 SPRR2FQ96RM1 72 aa4.06□□□□□ -1.76
RFC4-214ENST00000494047 KRTAP2-4Q9BYR9 128 aa4.06□□□□□ -1.76
RFC4-214ENST00000494047 KRTAP19-7Q3SYF9 63 aa4.03□□□□□ -1.76
RFC4-214ENST00000494047 SPRR2EP22531 72 aa3.99□□□□□ -1.77
RFC4-214ENST00000494047 SPRR2BP35325 72 aa3.99□□□□□ -1.77
RFC4-214ENST00000494047 SPRR2AP35326 72 aa3.99□□□□□ -1.77
RFC4-214ENST00000494047 KRTAP2-1Q9BYU5 128 aa3.99□□□□□ -1.77
RFC4-214ENST00000494047 GPR98Q8WXG9 6306 aa3.97□□□□□ -1.77
RFC4-214ENST00000494047 MT1EP04732 61 aa3.97□□□□□ -1.77
RFC4-214ENST00000494047 MT1LQ93083 61 aa3.97□□□□□ -1.77
RFC4-214ENST00000494047 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
RFC4-214ENST00000494047 KRTAP2-2Q9BYT5 123 aa3.9□□□□□ -1.78
RFC4-214ENST00000494047 KRTAP9-6A8MVA2 160 aa3.89□□□□□ -1.79
RFC4-214ENST00000494047 SPRR2DP22532 72 aa3.86□□□□□ -1.79
RFC4-214ENST00000494047 MT1GP13640 62 aa3.81□□□□□ -1.8
RFC4-214ENST00000494047 KRTAP5-3Q6L8H2 238 aa3.77□□□□□ -1.81
RFC4-214ENST00000494047 KRTAP19-3Q7Z4W3 81 aa3.76□□□□□ -1.81
RFC4-214ENST00000494047 MT1MQ8N339 61 aa3.71□□□□□ -1.82
RFC4-214ENST00000494047 DSTQ03001 7570 aaKnown RBP3.62□□□□□ -1.83
RFC4-214ENST00000494047 MT1AP04731 61 aa3.51□□□□□ -1.85
RFC4-214ENST00000494047 KRTAP4-3Q9BYR4 195 aa3.48□□□□□ -1.85
RFC4-214ENST00000494047 KRTAP12-4P60329 112 aa3.45□□□□□ -1.86
RFC4-214ENST00000494047 AHNAK2Q8IVF2 5795 aa3.44□□□□□ -1.86
RFC4-214ENST00000494047 HMCN1Q96RW7 5635 aa3.43□□□□□ -1.86
RFC4-214ENST00000494047 KRTAP5-4Q6L8H1 288 aa3.38□□□□□ -1.87
RFC4-214ENST00000494047 KRTAP5-10Q6L8G5 202 aa3.36□□□□□ -1.87
RFC4-214ENST00000494047 MT4P47944 62 aa3.34□□□□□ -1.88
RFC4-214ENST00000494047 LCE3DQ9BYE3 92 aa3.31□□□□□ -1.88
RFC4-214ENST00000494047 KRTAP5-7Q6L8G8 165 aa3.3□□□□□ -1.88
RFC4-214ENST00000494047 KRTAP5-5Q701N2 237 aaPredicted RBP3.3□□□□□ -1.88
RFC4-214ENST00000494047 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
RFC4-214ENST00000494047 KRTAP6-1Q3LI64 71 aa3.28□□□□□ -1.88
RFC4-214ENST00000494047 KRTAP20-2Q3LI61 65 aa3.17□□□□□ -1.9
RFC4-214ENST00000494047 SYNE1Q8NF91 8797 aaKnown RBP3.12□□□□□ -1.91
RFC4-214ENST00000494047 MT3P25713 68 aa3.12□□□□□ -1.91
RFC4-214ENST00000494047 PRM1P04553 51 aa3.02□□□□□ -1.93
RFC4-214ENST00000494047 AHNAKQ09666 5890 aaKnown RBP2.99□□□□□ -1.93
RFC4-214ENST00000494047 KRTAP5-2Q701N4 177 aa2.97□□□□□ -1.93
RFC4-214ENST00000494047 KRTAP6-2Q3LI66 62 aa2.95□□□□□ -1.94
RFC4-214ENST00000494047 MUC5BQ9HC84 5762 aaPredicted RBP2.91□□□□□ -1.94
RFC4-214ENST00000494047 KRTAP5-11Q6L8G4 156 aa2.89□□□□□ -1.95
RFC4-214ENST00000494047 MUC5ACP98088 5654 aa2.89□□□□□ -1.95
RFC4-214ENST00000494047 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.86□□□□□ -1.95
RFC4-214ENST00000494047 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
RFC4-214ENST00000494047 OBSCNQ5VST9 7968 aa2.75□□□□□ -1.97
RFC4-214ENST00000494047 LCE1EQ5T753 118 aa2.74□□□□□ -1.97
RFC4-214ENST00000494047 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
RFC4-214ENST00000494047 KRTAP5-1Q6L8H4 278 aa2.63□□□□□ -1.99
RFC4-214ENST00000494047 LCE1CQ5T751 118 aa2.42□□□□□ -2.02
RFC4-214ENST00000494047 LCE1BQ5T7P3 118 aa2.42□□□□□ -2.02
RFC4-214ENST00000494047 KRTAP4-4Q9BYR3 166 aa2.39□□□□□ -2.03
RFC4-214ENST00000494047 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
RFC4-214ENST00000494047 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
RFC4-214ENST00000494047 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
RFC4-214ENST00000494047 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
RFC4-214ENST00000494047 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 86.1 ms