RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 MUC12Q9UKN1 5478 aa5.44□□□□□ -1.54
ACTB-213ENST00000493945 LCE1AQ5T7P2 110 aa5.42□□□□□ -1.54
ACTB-213ENST00000493945 NEBP20929 6669 aa5.4□□□□□ -1.54
ACTB-213ENST00000493945 KRTAP19-3Q7Z4W3 81 aa5.39□□□□□ -1.55
ACTB-213ENST00000493945 MDN1Q9NU22 5596 aa5.37□□□□□ -1.55
ACTB-213ENST00000493945 KRTAP19-4Q3LI73 84 aa5.35□□□□□ -1.55
ACTB-213ENST00000493945 KTN1-AS1Q86SY8 53 aa5.34□□□□□ -1.55
ACTB-213ENST00000493945 MT1GP13640 62 aa5.33□□□□□ -1.56
ACTB-213ENST00000493945 SPRR2DP22532 72 aa5.33□□□□□ -1.56
ACTB-213ENST00000493945 MT1LQ93083 61 aa5.32□□□□□ -1.56
ACTB-213ENST00000493945 KRTAP15-1Q3LI76 137 aa5.3□□□□□ -1.56
ACTB-213ENST00000493945 LCE5AQ5TCM9 118 aa5.3□□□□□ -1.56
ACTB-213ENST00000493945 PRAC1Q96KF2 57 aa5.23□□□□□ -1.57
ACTB-213ENST00000493945 MT1MQ8N339 61 aa5.19□□□□□ -1.58
ACTB-213ENST00000493945 KRTAP2-3P0C7H8 128 aa5.17□□□□□ -1.58
ACTB-213ENST00000493945 KRTAP2-4Q9BYR9 128 aa5.17□□□□□ -1.58
ACTB-213ENST00000493945 LCE3BQ5TA77 95 aa5.12□□□□□ -1.59
ACTB-213ENST00000493945 LCE3CQ5T5A8 94 aa5.09□□□□□ -1.59
ACTB-213ENST00000493945 KRTAP2-2Q9BYT5 123 aa5.04□□□□□ -1.6
ACTB-213ENST00000493945 KRTAP2-1Q9BYU5 128 aa5.04□□□□□ -1.6
ACTB-213ENST00000493945 KRTAP4-7Q9BYR0 210 aa4.98□□□□□ -1.61
ACTB-213ENST00000493945 KRTAP4-3Q9BYR4 195 aa4.95□□□□□ -1.62
ACTB-213ENST00000493945 DSTQ03001 7570 aaKnown RBP4.91□□□□□ -1.62
ACTB-213ENST00000493945 GPR98Q8WXG9 6306 aa4.9□□□□□ -1.63
ACTB-213ENST00000493945 LCE4AQ5TA78 99 aa4.76□□□□□ -1.65
ACTB-213ENST00000493945 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
ACTB-213ENST00000493945 SPRR5A0A1B0GTR4 108 aa4.68□□□□□ -1.66
ACTB-213ENST00000493945 KRTAP5-5Q701N2 237 aaPredicted RBP4.68□□□□□ -1.66
ACTB-213ENST00000493945 KRTAP5-4Q6L8H1 288 aa4.66□□□□□ -1.66
ACTB-213ENST00000493945 KRTAP9-6A8MVA2 160 aa4.65□□□□□ -1.67
ACTB-213ENST00000493945 KRTAP12-4P60329 112 aa4.59□□□□□ -1.67
ACTB-213ENST00000493945 LUZP6Q538Z0 58 aa4.58□□□□□ -1.68
ACTB-213ENST00000493945 MT1AP04731 61 aa4.57□□□□□ -1.68
ACTB-213ENST00000493945 MT4P47944 62 aa4.57□□□□□ -1.68
ACTB-213ENST00000493945 KRTAP4-9Q9BYQ8 210 aa4.55□□□□□ -1.68
ACTB-213ENST00000493945 LCE1DQ5T752 114 aa4.54□□□□□ -1.68
ACTB-213ENST00000493945 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
ACTB-213ENST00000493945 HMCN1Q96RW7 5635 aa4.42□□□□□ -1.7
ACTB-213ENST00000493945 KRTAP4-6Q9BYQ5 205 aa4.42□□□□□ -1.7
ACTB-213ENST00000493945 KRTAP20-2Q3LI61 65 aa4.39□□□□□ -1.71
ACTB-213ENST00000493945 SYNE1Q8NF91 8797 aaKnown RBP4.36□□□□□ -1.71
ACTB-213ENST00000493945 KRTAP9-4Q9BYQ2 154 aa4.35□□□□□ -1.71
ACTB-213ENST00000493945 KRTAP5-10Q6L8G5 202 aa4.28□□□□□ -1.72
ACTB-213ENST00000493945 AHNAK2Q8IVF2 5795 aa4.21□□□□□ -1.74
ACTB-213ENST00000493945 KRTAP5-7Q6L8G8 165 aa4.21□□□□□ -1.74
ACTB-213ENST00000493945 MT3P25713 68 aa4.2□□□□□ -1.74
ACTB-213ENST00000493945 KRTAP5-3Q6L8H2 238 aa4.2□□□□□ -1.74
ACTB-213ENST00000493945 KRTAP6-2Q3LI66 62 aa4.18□□□□□ -1.74
ACTB-213ENST00000493945 KRTAP5-2Q701N4 177 aa4.16□□□□□ -1.74
ACTB-213ENST00000493945 NDUFAF8A1L188 74 aa4.02□□□□□ -1.77
ACTB-213ENST00000493945 H3BS24 57 aa3.96□□□□□ -1.78
ACTB-213ENST00000493945 KRTAP4-11Q9BYQ6 195 aa3.9□□□□□ -1.79
ACTB-213ENST00000493945 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
ACTB-213ENST00000493945 OBSCNQ5VST9 7968 aa3.75□□□□□ -1.81
ACTB-213ENST00000493945 LCE1EQ5T753 118 aa3.73□□□□□ -1.81
ACTB-213ENST00000493945 KRTAP5-8O75690 187 aa3.72□□□□□ -1.81
ACTB-213ENST00000493945 AHNAKQ09666 5890 aaKnown RBP3.69□□□□□ -1.82
ACTB-213ENST00000493945 LCE3EQ5T5B0 92 aa3.66□□□□□ -1.82
ACTB-213ENST00000493945 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
ACTB-213ENST00000493945 KRTAP5-1Q6L8H4 278 aa3.62□□□□□ -1.83
ACTB-213ENST00000493945 KRTAP4-12Q9BQ66 201 aa3.62□□□□□ -1.83
ACTB-213ENST00000493945 A0A0A0MQY5 61 aa3.61□□□□□ -1.83
ACTB-213ENST00000493945 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
ACTB-213ENST00000493945 MUC5BQ9HC84 5762 aaPredicted RBP3.55□□□□□ -1.84
ACTB-213ENST00000493945 LCE1CQ5T751 118 aa3.45□□□□□ -1.86
ACTB-213ENST00000493945 LCE1BQ5T7P3 118 aa3.45□□□□□ -1.86
ACTB-213ENST00000493945 INE1O15225 51 aa3.43□□□□□ -1.86
ACTB-213ENST00000493945 KRTAP4-2Q9BYR5 136 aa3.39□□□□□ -1.87
ACTB-213ENST00000493945 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.19□□□□□ -1.9
ACTB-213ENST00000493945 KRTAP5-11Q6L8G4 156 aa3.08□□□□□ -1.92
ACTB-213ENST00000493945 PRM1P04553 51 aa2.98□□□□□ -1.93
ACTB-213ENST00000493945 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
ACTB-213ENST00000493945 KRTAP21-2Q3LI59 83 aa2.91□□□□□ -1.94
ACTB-213ENST00000493945 PHGR1C9JFL3 82 aa2.62□□□□□ -1.99
ACTB-213ENST00000493945 KRTAP4-4Q9BYR3 166 aa2.57□□□□□ -2
ACTB-213ENST00000493945 MUC19Q7Z5P9 8384 aa2.26□□□□□ -2.05
ACTB-213ENST00000493945 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
ACTB-213ENST00000493945 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 5.7 ms