RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
CTSA-209ENST00000493522 KRTAP23-1A1A580 65 aa4.63□□□□□ -1.67
CTSA-209ENST00000493522 PSPHP1O15172 72 aa4.62□□□□□ -1.67
CTSA-209ENST00000493522 SPRR2DP22532 72 aa4.62□□□□□ -1.67
CTSA-209ENST00000493522 Q1T7F1 81 aa4.61□□□□□ -1.67
CTSA-209ENST00000493522 KRTAP10-12P60413 245 aa4.6□□□□□ -1.67
CTSA-209ENST00000493522 MIR22HGQ0VDD5 57 aa4.56□□□□□ -1.68
CTSA-209ENST00000493522 RPS28P62857 69 aaKnown RBP4.55□□□□□ -1.68
CTSA-209ENST00000493522 GPR98Q8WXG9 6306 aa4.52□□□□□ -1.69
CTSA-209ENST00000493522 KRTAP15-1Q3LI76 137 aa4.52□□□□□ -1.69
CTSA-209ENST00000493522 DSTQ03001 7570 aaKnown RBP4.48□□□□□ -1.69
CTSA-209ENST00000493522 A6NED7 52 aa4.48□□□□□ -1.69
CTSA-209ENST00000493522 K7ERS5 55 aa4.45□□□□□ -1.7
CTSA-209ENST00000493522 C10orf95Q9H7T3 257 aa4.45□□□□□ -1.7
CTSA-209ENST00000493522 SVIPQ8NHG7 77 aa4.44□□□□□ -1.7
CTSA-209ENST00000493522 TNP1P09430 55 aa4.42□□□□□ -1.7
CTSA-209ENST00000493522 KRTAP19-7Q3SYF9 63 aa4.32□□□□□ -1.72
CTSA-209ENST00000493522 LCE3AQ5TA76 89 aa4.32□□□□□ -1.72
CTSA-209ENST00000493522 CDC42SE1Q9NRR8 79 aa4.31□□□□□ -1.72
CTSA-209ENST00000493522 MT1EP04732 61 aa4.29□□□□□ -1.72
CTSA-209ENST00000493522 KRTAP19-5Q3LI72 72 aa4.29□□□□□ -1.72
CTSA-209ENST00000493522 KRTAP25-1Q3LHN0 102 aa4.27□□□□□ -1.73
CTSA-209ENST00000493522 KRTAP19-3Q7Z4W3 81 aa4.21□□□□□ -1.74
CTSA-209ENST00000493522 HMCN1Q96RW7 5635 aa4.18□□□□□ -1.74
CTSA-209ENST00000493522 ROMO1P60602 79 aa4.18□□□□□ -1.74
CTSA-209ENST00000493522 KRTAP12-3P60328 96 aa4.15□□□□□ -1.75
CTSA-209ENST00000493522 MT1LQ93083 61 aa4.13□□□□□ -1.75
CTSA-209ENST00000493522 MT1GP13640 62 aa4.12□□□□□ -1.75
CTSA-209ENST00000493522 PP632Q6XCG6 107 aa4.11□□□□□ -1.75
CTSA-209ENST00000493522 BRK1Q8WUW1 75 aa4.11□□□□□ -1.75
CTSA-209ENST00000493522 AHNAK2Q8IVF2 5795 aa4.11□□□□□ -1.75
CTSA-209ENST00000493522 MT1MQ8N339 61 aa4.08□□□□□ -1.76
CTSA-209ENST00000493522 MT4P47944 62 aa4.06□□□□□ -1.76
CTSA-209ENST00000493522 KRTAP5-10Q6L8G5 202 aa3.97□□□□□ -1.77
CTSA-209ENST00000493522 KRTAP4-3Q9BYR4 195 aa3.97□□□□□ -1.77
CTSA-209ENST00000493522 KRTAP5-4Q6L8H1 288 aa3.92□□□□□ -1.78
CTSA-209ENST00000493522 KRTAP5-7Q6L8G8 165 aa3.86□□□□□ -1.79
CTSA-209ENST00000493522 PMAIP1Q13794 54 aa3.85□□□□□ -1.79
CTSA-209ENST00000493522 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
CTSA-209ENST00000493522 PRO0628Q9UI54 55 aa3.74□□□□□ -1.81
CTSA-209ENST00000493522 KRTAP20-2Q3LI61 65 aa3.73□□□□□ -1.81
CTSA-209ENST00000493522 SPRR5A0A1B0GTR4 108 aa3.7□□□□□ -1.82
CTSA-209ENST00000493522 KRTAP5-5Q701N2 237 aaPredicted RBP3.69□□□□□ -1.82
CTSA-209ENST00000493522 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
CTSA-209ENST00000493522 A0A0A0MQY5 61 aa3.68□□□□□ -1.82
CTSA-209ENST00000493522 PRAC1Q96KF2 57 aa3.68□□□□□ -1.82
CTSA-209ENST00000493522 KRTAP12-4P60329 112 aa3.65□□□□□ -1.83
CTSA-209ENST00000493522 KRTAP9-6A8MVA2 160 aa3.6□□□□□ -1.83
CTSA-209ENST00000493522 KRTAP5-11Q6L8G4 156 aa3.6□□□□□ -1.83
CTSA-209ENST00000493522 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.58□□□□□ -1.84
CTSA-209ENST00000493522 KTN1-AS1Q86SY8 53 aa3.55□□□□□ -1.84
CTSA-209ENST00000493522 MT1AP04731 61 aa3.53□□□□□ -1.84
CTSA-209ENST00000493522 KRTAP6-1Q3LI64 71 aa3.49□□□□□ -1.85
CTSA-209ENST00000493522 AHNAKQ09666 5890 aaKnown RBP3.46□□□□□ -1.85
CTSA-209ENST00000493522 LCE1EQ5T753 118 aa3.46□□□□□ -1.86
CTSA-209ENST00000493522 MUC5BQ9HC84 5762 aaPredicted RBP3.46□□□□□ -1.86
CTSA-209ENST00000493522 OBSCNQ5VST9 7968 aa3.43□□□□□ -1.86
CTSA-209ENST00000493522 MUC5ACP98088 5654 aa3.43□□□□□ -1.86
CTSA-209ENST00000493522 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
CTSA-209ENST00000493522 MT3P25713 68 aa3.37□□□□□ -1.87
CTSA-209ENST00000493522 KRTAP5-8O75690 187 aa3.35□□□□□ -1.87
CTSA-209ENST00000493522 KRTAP6-2Q3LI66 62 aa3.29□□□□□ -1.88
CTSA-209ENST00000493522 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
CTSA-209ENST00000493522 KRTAP5-1Q6L8H4 278 aa3.09□□□□□ -1.91
CTSA-209ENST00000493522 LUZP6Q538Z0 58 aa3.06□□□□□ -1.92
CTSA-209ENST00000493522 NDUFAF8A1L188 74 aa2.99□□□□□ -1.93
CTSA-209ENST00000493522 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
CTSA-209ENST00000493522 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
CTSA-209ENST00000493522 LCE1BQ5T7P3 118 aa2.73□□□□□ -1.97
CTSA-209ENST00000493522 LCE3EQ5T5B0 92 aa2.7□□□□□ -1.98
CTSA-209ENST00000493522 LCE1CQ5T751 118 aa2.67□□□□□ -1.98
CTSA-209ENST00000493522 PHGR1C9JFL3 82 aa2.34□□□□□ -2.03
CTSA-209ENST00000493522 KRTAP21-2Q3LI59 83 aa2.28□□□□□ -2.04
CTSA-209ENST00000493522 INE1O15225 51 aa2.17□□□□□ -2.06
CTSA-209ENST00000493522 PRM1P04553 51 aa2.16□□□□□ -2.06
CTSA-209ENST00000493522 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
CTSA-209ENST00000493522 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
CTSA-209ENST00000493522 MUC16Q8WXI7 14507 aa1.45□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 6.8 ms