RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
HDAC3-213ENST00000492506 LCE1AQ5T7P2 110 aa5.62□□□□□ -1.51
HDAC3-213ENST00000492506 R4GN34 69 aa5.61□□□□□ -1.51
HDAC3-213ENST00000492506 SPRR5A0A1B0GTR4 108 aa5.59□□□□□ -1.51
HDAC3-213ENST00000492506 INE1O15225 51 aa5.58□□□□□ -1.52
HDAC3-213ENST00000492506 KRTAP8-1Q8IUC2 63 aa5.53□□□□□ -1.52
HDAC3-213ENST00000492506 SPRR2DP22532 72 aa5.52□□□□□ -1.53
HDAC3-213ENST00000492506 GPR98Q8WXG9 6306 aa5.51□□□□□ -1.53
HDAC3-213ENST00000492506 MT1XP80297 61 aa5.5□□□□□ -1.53
HDAC3-213ENST00000492506 LCE3BQ5TA77 95 aa5.43□□□□□ -1.54
HDAC3-213ENST00000492506 KRTAP4-8A0A0G2JLE6 195 aa5.41□□□□□ -1.54
HDAC3-213ENST00000492506 KRTAP4-8Q9BYQ9 185 aa5.41□□□□□ -1.54
HDAC3-213ENST00000492506 TNP1P09430 55 aa5.39□□□□□ -1.55
HDAC3-213ENST00000492506 DSTQ03001 7570 aaKnown RBP5.31□□□□□ -1.56
HDAC3-213ENST00000492506 KRTAP10-7P60409 375 aaPredicted RBP5.23□□□□□ -1.57
HDAC3-213ENST00000492506 KRTAP10-12P60413 245 aa5.22□□□□□ -1.57
HDAC3-213ENST00000492506 KRTAP4-9Q9BYQ8 210 aa5.18□□□□□ -1.58
HDAC3-213ENST00000492506 LCE5AQ5TCM9 118 aa5.03□□□□□ -1.6
HDAC3-213ENST00000492506 HMCN1Q96RW7 5635 aa5.02□□□□□ -1.61
HDAC3-213ENST00000492506 LCE1DQ5T752 114 aa5.01□□□□□ -1.61
HDAC3-213ENST00000492506 AHNAK2Q8IVF2 5795 aa4.98□□□□□ -1.61
HDAC3-213ENST00000492506 KRTAP19-7Q3SYF9 63 aa4.94□□□□□ -1.62
HDAC3-213ENST00000492506 KRTAP19-3Q7Z4W3 81 aa4.93□□□□□ -1.62
HDAC3-213ENST00000492506 MT1EP04732 61 aa4.9□□□□□ -1.63
HDAC3-213ENST00000492506 MT4P47944 62 aa4.88□□□□□ -1.63
HDAC3-213ENST00000492506 KRTAP5-10Q6L8G5 202 aa4.88□□□□□ -1.63
HDAC3-213ENST00000492506 LCE4AQ5TA78 99 aa4.86□□□□□ -1.63
HDAC3-213ENST00000492506 LCE3AQ5TA76 89 aa4.79□□□□□ -1.64
HDAC3-213ENST00000492506 MT1GP13640 62 aa4.76□□□□□ -1.65
HDAC3-213ENST00000492506 KRTAP5-7Q6L8G8 165 aa4.75□□□□□ -1.65
HDAC3-213ENST00000492506 KRTAP5-4Q6L8H1 288 aa4.75□□□□□ -1.65
HDAC3-213ENST00000492506 KRTAP4-6Q9BYQ5 205 aa4.73□□□□□ -1.65
HDAC3-213ENST00000492506 MT1MQ8N339 61 aa4.69□□□□□ -1.66
HDAC3-213ENST00000492506 KRTAP19-5Q3LI72 72 aa4.67□□□□□ -1.66
HDAC3-213ENST00000492506 KRTAP5-3Q6L8H2 238 aa4.66□□□□□ -1.66
HDAC3-213ENST00000492506 KRTAP12-3P60328 96 aa4.64□□□□□ -1.67
HDAC3-213ENST00000492506 KRTAP4-3Q9BYR4 195 aa4.62□□□□□ -1.67
HDAC3-213ENST00000492506 MT1LQ93083 61 aa4.6□□□□□ -1.67
HDAC3-213ENST00000492506 KRTAP19-4Q3LI73 84 aa4.51□□□□□ -1.69
HDAC3-213ENST00000492506 KRTAP20-2Q3LI61 65 aa4.49□□□□□ -1.69
HDAC3-213ENST00000492506 LCE3CQ5T5A8 94 aa4.41□□□□□ -1.7
HDAC3-213ENST00000492506 KRTAP4-7Q9BYR0 210 aa4.38□□□□□ -1.71
HDAC3-213ENST00000492506 KRTAP5-5Q701N2 237 aaPredicted RBP4.37□□□□□ -1.71
HDAC3-213ENST00000492506 SYNE1Q8NF91 8797 aaKnown RBP4.33□□□□□ -1.72
HDAC3-213ENST00000492506 KRTAP12-4P60329 112 aa4.29□□□□□ -1.72
HDAC3-213ENST00000492506 AHNAKQ09666 5890 aaKnown RBP4.22□□□□□ -1.73
HDAC3-213ENST00000492506 KRTAP4-11Q9BYQ6 195 aa4.2□□□□□ -1.74
HDAC3-213ENST00000492506 MUC5ACP98088 5654 aa4.17□□□□□ -1.74
HDAC3-213ENST00000492506 LOC100996750A0A140TA64 210 aa4.17□□□□□ -1.74
HDAC3-213ENST00000492506 MUC5BQ9HC84 5762 aaPredicted RBP4.16□□□□□ -1.74
HDAC3-213ENST00000492506 KRTAP5-8O75690 187 aa4.09□□□□□ -1.75
HDAC3-213ENST00000492506 KRTAP5-2Q701N4 177 aa4.09□□□□□ -1.75
HDAC3-213ENST00000492506 KRTAP9-6A8MVA2 160 aa4.05□□□□□ -1.76
HDAC3-213ENST00000492506 OBSCNQ5VST9 7968 aa3.99□□□□□ -1.77
HDAC3-213ENST00000492506 KRTAP6-1Q3LI64 71 aa3.92□□□□□ -1.78
HDAC3-213ENST00000492506 MT1AP04731 61 aa3.9□□□□□ -1.79
HDAC3-213ENST00000492506 KRTAP9-9Q9BYP9 154 aa3.9□□□□□ -1.79
HDAC3-213ENST00000492506 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
HDAC3-213ENST00000492506 KRTAP9-4Q9BYQ2 154 aa3.82□□□□□ -1.8
HDAC3-213ENST00000492506 KRTAP5-1Q6L8H4 278 aa3.74□□□□□ -1.81
HDAC3-213ENST00000492506 MT3P25713 68 aa3.56□□□□□ -1.84
HDAC3-213ENST00000492506 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
HDAC3-213ENST00000492506 PRM1P04553 51 aa3.5□□□□□ -1.85
HDAC3-213ENST00000492506 LCE3DQ9BYE3 92 aa3.49□□□□□ -1.85
HDAC3-213ENST00000492506 LCE1EQ5T753 118 aa3.4□□□□□ -1.87
HDAC3-213ENST00000492506 KRTAP4-2Q9BYR5 136 aa3.28□□□□□ -1.88
HDAC3-213ENST00000492506 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.9
HDAC3-213ENST00000492506 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
HDAC3-213ENST00000492506 KRTAP4-12Q9BQ66 201 aa3.11□□□□□ -1.91
HDAC3-213ENST00000492506 KRTAP5-11Q6L8G4 156 aa2.98□□□□□ -1.93
HDAC3-213ENST00000492506 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
HDAC3-213ENST00000492506 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.84□□□□□ -1.95
HDAC3-213ENST00000492506 PHGR1C9JFL3 82 aa2.83□□□□□ -1.96
HDAC3-213ENST00000492506 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
HDAC3-213ENST00000492506 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
HDAC3-213ENST00000492506 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
HDAC3-213ENST00000492506 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
HDAC3-213ENST00000492506 MUC16Q8WXI7 14507 aa1.73□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 72.7 ms