RNA–Protein interactions for RNA: ENST00000491629.5

USF1-206, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 933 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-206ENST00000491629 SPINT4Q6UDR6 99 aa5.27□□□□□ -1.57
USF1-206ENST00000491629 KRTAP4-9Q9BYQ8 210 aa5.24□□□□□ -1.57
USF1-206ENST00000491629 DSTQ03001 7570 aaKnown RBP5.24□□□□□ -1.57
USF1-206ENST00000491629 NDUFAF8A1L188 74 aa5.22□□□□□ -1.57
USF1-206ENST00000491629 R4GN34 69 aa5.19□□□□□ -1.58
USF1-206ENST00000491629 M0QZ58 72 aa5.15□□□□□ -1.59
USF1-206ENST00000491629 LCE5AQ5TCM9 118 aa5.08□□□□□ -1.6
USF1-206ENST00000491629 LUZP6Q538Z0 58 aa5.07□□□□□ -1.6
USF1-206ENST00000491629 LCE1DQ5T752 114 aa5.05□□□□□ -1.6
USF1-206ENST00000491629 KRTAP19-7Q3SYF9 63 aa5.01□□□□□ -1.61
USF1-206ENST00000491629 HMCN1Q96RW7 5635 aa4.98□□□□□ -1.61
USF1-206ENST00000491629 KRTAP19-3Q7Z4W3 81 aa4.98□□□□□ -1.61
USF1-206ENST00000491629 MT1EP04732 61 aa4.96□□□□□ -1.62
USF1-206ENST00000491629 C10orf95Q9H7T3 257 aa4.95□□□□□ -1.62
USF1-206ENST00000491629 AHNAK2Q8IVF2 5795 aa4.92□□□□□ -1.62
USF1-206ENST00000491629 MT4P47944 62 aa4.92□□□□□ -1.62
USF1-206ENST00000491629 KRTAP5-10Q6L8G5 202 aa4.92□□□□□ -1.62
USF1-206ENST00000491629 KRTAP13-4Q3LI77 160 aa4.9□□□□□ -1.63
USF1-206ENST00000491629 LCE4AQ5TA78 99 aa4.88□□□□□ -1.63
USF1-206ENST00000491629 A0A0D9SG42 100 aa4.83□□□□□ -1.64
USF1-206ENST00000491629 KRTAP12-1P59990 96 aa4.82□□□□□ -1.64
USF1-206ENST00000491629 MT1GP13640 62 aa4.8□□□□□ -1.64
USF1-206ENST00000491629 KRTAP5-4Q6L8H1 288 aa4.79□□□□□ -1.64
USF1-206ENST00000491629 KRTAP4-6Q9BYQ5 205 aa4.79□□□□□ -1.64
USF1-206ENST00000491629 KRTAP5-7Q6L8G8 165 aa4.76□□□□□ -1.65
USF1-206ENST00000491629 MT1MQ8N339 61 aa4.75□□□□□ -1.65
USF1-206ENST00000491629 KRTAP19-5Q3LI72 72 aa4.74□□□□□ -1.65
USF1-206ENST00000491629 CAMK2N1Q7Z7J9 78 aa4.74□□□□□ -1.65
USF1-206ENST00000491629 KRTAP4-3Q9BYR4 195 aa4.72□□□□□ -1.65
USF1-206ENST00000491629 KRTAP5-3Q6L8H2 238 aa4.69□□□□□ -1.66
USF1-206ENST00000491629 PP632Q6XCG6 107 aa4.69□□□□□ -1.66
USF1-206ENST00000491629 MT1LQ93083 61 aa4.68□□□□□ -1.66
USF1-206ENST00000491629 SPRR5A0A1B0GTR4 108 aa4.54□□□□□ -1.68
USF1-206ENST00000491629 KRTAP20-2Q3LI61 65 aa4.53□□□□□ -1.68
USF1-206ENST00000491629 KRTAP23-1A1A580 65 aa4.52□□□□□ -1.69
USF1-206ENST00000491629 KRTAP4-7Q9BYR0 210 aa4.48□□□□□ -1.69
USF1-206ENST00000491629 INE1O15225 51 aa4.47□□□□□ -1.69
USF1-206ENST00000491629 LCE3AQ5TA76 89 aa4.43□□□□□ -1.7
USF1-206ENST00000491629 KRTAP5-5Q701N2 237 aaPredicted RBP4.43□□□□□ -1.7
USF1-206ENST00000491629 SYNE1Q8NF91 8797 aaKnown RBP4.33□□□□□ -1.72
USF1-206ENST00000491629 KRTAP12-4P60329 112 aa4.3□□□□□ -1.72
USF1-206ENST00000491629 LOC100996750A0A140TA64 210 aa4.26□□□□□ -1.73
USF1-206ENST00000491629 TNP1P09430 55 aa4.23□□□□□ -1.73
USF1-206ENST00000491629 KRTAP12-3P60328 96 aa4.22□□□□□ -1.73
USF1-206ENST00000491629 KRTAP4-11Q9BYQ6 195 aa4.22□□□□□ -1.73
USF1-206ENST00000491629 KRTAP5-8O75690 187 aa4.13□□□□□ -1.75
USF1-206ENST00000491629 KRTAP5-2Q701N4 177 aa4.13□□□□□ -1.75
USF1-206ENST00000491629 MUC5ACP98088 5654 aa4.13□□□□□ -1.75
USF1-206ENST00000491629 MUC5BQ9HC84 5762 aaPredicted RBP4.12□□□□□ -1.75
USF1-206ENST00000491629 AHNAKQ09666 5890 aaKnown RBP4.09□□□□□ -1.75
USF1-206ENST00000491629 KRTAP19-4Q3LI73 84 aa4.04□□□□□ -1.76
USF1-206ENST00000491629 KRTAP6-1Q3LI64 71 aa4□□□□□ -1.77
USF1-206ENST00000491629 OBSCNQ5VST9 7968 aa3.98□□□□□ -1.77
USF1-206ENST00000491629 MT1AP04731 61 aa3.95□□□□□ -1.78
USF1-206ENST00000491629 KRTAP4-12Q9BQ66 201 aa3.9□□□□□ -1.79
USF1-206ENST00000491629 KRTAP9-9Q9BYP9 154 aa3.9□□□□□ -1.79
USF1-206ENST00000491629 KRTAP6-2Q3LI66 62 aa3.88□□□□□ -1.79
USF1-206ENST00000491629 LCE3CQ5T5A8 94 aa3.86□□□□□ -1.79
USF1-206ENST00000491629 KRTAP9-4Q9BYQ2 154 aa3.86□□□□□ -1.79
USF1-206ENST00000491629 KRTAP5-1Q6L8H4 278 aa3.79□□□□□ -1.8
USF1-206ENST00000491629 KRTAP9-6A8MVA2 160 aa3.75□□□□□ -1.81
USF1-206ENST00000491629 MT3P25713 68 aa3.59□□□□□ -1.83
USF1-206ENST00000491629 LCE1EQ5T753 118 aa3.41□□□□□ -1.86
USF1-206ENST00000491629 KRTAP4-2Q9BYR5 136 aa3.33□□□□□ -1.88
USF1-206ENST00000491629 LCE1BQ5T7P3 118 aa3.25□□□□□ -1.89
USF1-206ENST00000491629 LCE1CQ5T751 118 aa3.18□□□□□ -1.9
USF1-206ENST00000491629 KRTAP5-11Q6L8G4 156 aa3□□□□□ -1.93
USF1-206ENST00000491629 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
USF1-206ENST00000491629 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.86□□□□□ -1.95
USF1-206ENST00000491629 PHGR1C9JFL3 82 aa2.84□□□□□ -1.95
USF1-206ENST00000491629 PRM1P04553 51 aa2.81□□□□□ -1.96
USF1-206ENST00000491629 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
USF1-206ENST00000491629 LCE3DQ9BYE3 92 aa2.76□□□□□ -1.97
USF1-206ENST00000491629 KRTAP21-2Q3LI59 83 aa2.65□□□□□ -1.99
USF1-206ENST00000491629 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
USF1-206ENST00000491629 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
USF1-206ENST00000491629 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
USF1-206ENST00000491629 MUC16Q8WXI7 14507 aa1.72□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 73 ms