RNA–Protein interactions for RNA: ENST00000491028.1

MCF2L-230, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-230ENST00000491028 KRTAP12-3P60328 96 aa6.82□□□□□ -1.32
MCF2L-230ENST00000491028 SPRR2EP22531 72 aa6.77□□□□□ -1.33
MCF2L-230ENST00000491028 SPRR2BP35325 72 aa6.77□□□□□ -1.33
MCF2L-230ENST00000491028 SPRR2AP35326 72 aa6.77□□□□□ -1.33
MCF2L-230ENST00000491028 LCE1AQ5T7P2 110 aa6.75□□□□□ -1.33
MCF2L-230ENST00000491028 KRTAP19-3Q7Z4W3 81 aa6.69□□□□□ -1.34
MCF2L-230ENST00000491028 KRTAP2-2Q9BYT5 123 aa6.69□□□□□ -1.34
MCF2L-230ENST00000491028 KRTAP2-1Q9BYU5 128 aa6.69□□□□□ -1.34
MCF2L-230ENST00000491028 KTN1-AS1Q86SY8 53 aa6.67□□□□□ -1.34
MCF2L-230ENST00000491028 MT1LQ93083 61 aa6.66□□□□□ -1.34
MCF2L-230ENST00000491028 PRAC1Q96KF2 57 aa6.63□□□□□ -1.35
MCF2L-230ENST00000491028 LCE5AQ5TCM9 118 aa6.61□□□□□ -1.35
MCF2L-230ENST00000491028 MT1GP13640 62 aa6.6□□□□□ -1.35
MCF2L-230ENST00000491028 KRTAP15-1Q3LI76 137 aa6.59□□□□□ -1.35
MCF2L-230ENST00000491028 SPRR2DP22532 72 aa6.55□□□□□ -1.36
MCF2L-230ENST00000491028 KRTAP19-4Q3LI73 84 aa6.53□□□□□ -1.36
MCF2L-230ENST00000491028 MT1MQ8N339 61 aa6.49□□□□□ -1.37
MCF2L-230ENST00000491028 LCE3BQ5TA77 95 aa6.41□□□□□ -1.38
MCF2L-230ENST00000491028 LCE3CQ5T5A8 94 aa6.35□□□□□ -1.39
MCF2L-230ENST00000491028 KRTAP4-7Q9BYR0 210 aa6.33□□□□□ -1.4
MCF2L-230ENST00000491028 SVIPQ8NHG7 77 aa6.29□□□□□ -1.4
MCF2L-230ENST00000491028 KRTAP4-3Q9BYR4 195 aa6.27□□□□□ -1.41
MCF2L-230ENST00000491028 DSTQ03001 7570 aaKnown RBP6.19□□□□□ -1.42
MCF2L-230ENST00000491028 GPR98Q8WXG9 6306 aa6.13□□□□□ -1.43
MCF2L-230ENST00000491028 KRTAP4-9Q9BYQ8 210 aa6.03□□□□□ -1.44
MCF2L-230ENST00000491028 LOC100996750A0A140TA64 210 aa5.96□□□□□ -1.46
MCF2L-230ENST00000491028 SPRR5A0A1B0GTR4 108 aa5.94□□□□□ -1.46
MCF2L-230ENST00000491028 KRTAP9-6A8MVA2 160 aa5.94□□□□□ -1.46
MCF2L-230ENST00000491028 KRTAP5-5Q701N2 237 aaPredicted RBP5.9□□□□□ -1.46
MCF2L-230ENST00000491028 LCE1DQ5T752 114 aa5.86□□□□□ -1.47
MCF2L-230ENST00000491028 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
MCF2L-230ENST00000491028 KRTAP5-4Q6L8H1 288 aa5.84□□□□□ -1.47
MCF2L-230ENST00000491028 MT4P47944 62 aa5.75□□□□□ -1.49
MCF2L-230ENST00000491028 HMCN1Q96RW7 5635 aa5.69□□□□□ -1.5
MCF2L-230ENST00000491028 MT1AP04731 61 aa5.69□□□□□ -1.5
MCF2L-230ENST00000491028 KRTAP5-10Q6L8G5 202 aa5.62□□□□□ -1.51
MCF2L-230ENST00000491028 AHNAK2Q8IVF2 5795 aa5.59□□□□□ -1.51
MCF2L-230ENST00000491028 KRTAP12-4P60329 112 aa5.59□□□□□ -1.51
MCF2L-230ENST00000491028 KRTAP6-1Q3LI64 71 aa5.59□□□□□ -1.51
MCF2L-230ENST00000491028 KRTAP4-6Q9BYQ5 205 aa5.55□□□□□ -1.52
MCF2L-230ENST00000491028 LUZP6Q538Z0 58 aa5.54□□□□□ -1.52
MCF2L-230ENST00000491028 SYNE1Q8NF91 8797 aaKnown RBP5.53□□□□□ -1.52
MCF2L-230ENST00000491028 KRTAP5-7Q6L8G8 165 aa5.47□□□□□ -1.53
MCF2L-230ENST00000491028 KRTAP20-2Q3LI61 65 aa5.46□□□□□ -1.54
MCF2L-230ENST00000491028 KRTAP5-3Q6L8H2 238 aa5.43□□□□□ -1.54
MCF2L-230ENST00000491028 KRTAP9-4Q9BYQ2 154 aa5.42□□□□□ -1.54
MCF2L-230ENST00000491028 KRTAP6-2Q3LI66 62 aa5.22□□□□□ -1.57
MCF2L-230ENST00000491028 KRTAP5-2Q701N4 177 aa5.22□□□□□ -1.57
MCF2L-230ENST00000491028 MT3P25713 68 aa5.18□□□□□ -1.58
MCF2L-230ENST00000491028 NDUFAF8A1L188 74 aa5.05□□□□□ -1.6
MCF2L-230ENST00000491028 KRTAP4-11Q9BYQ6 195 aa4.94□□□□□ -1.62
MCF2L-230ENST00000491028 KRTAP5-8O75690 187 aa4.77□□□□□ -1.65
MCF2L-230ENST00000491028 OBSCNQ5VST9 7968 aa4.71□□□□□ -1.65
MCF2L-230ENST00000491028 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
MCF2L-230ENST00000491028 MUC5ACP98088 5654 aa4.68□□□□□ -1.66
MCF2L-230ENST00000491028 AHNAKQ09666 5890 aaKnown RBP4.67□□□□□ -1.66
MCF2L-230ENST00000491028 MUC5BQ9HC84 5762 aaPredicted RBP4.65□□□□□ -1.66
MCF2L-230ENST00000491028 KRTAP9-9Q9BYP9 154 aa4.62□□□□□ -1.67
MCF2L-230ENST00000491028 LCE1EQ5T753 118 aa4.61□□□□□ -1.67
MCF2L-230ENST00000491028 KRTAP5-1Q6L8H4 278 aa4.56□□□□□ -1.68
MCF2L-230ENST00000491028 LCE3EQ5T5B0 92 aa4.53□□□□□ -1.68
MCF2L-230ENST00000491028 A0A0A0MQY5 61 aa4.38□□□□□ -1.71
MCF2L-230ENST00000491028 LCE1CQ5T751 118 aa4.28□□□□□ -1.72
MCF2L-230ENST00000491028 LCE1BQ5T7P3 118 aa4.28□□□□□ -1.72
MCF2L-230ENST00000491028 KRTAP4-2Q9BYR5 136 aa4.28□□□□□ -1.72
MCF2L-230ENST00000491028 INE1O15225 51 aa4.22□□□□□ -1.73
MCF2L-230ENST00000491028 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.98□□□□□ -1.77
MCF2L-230ENST00000491028 KRTAP5-11Q6L8G4 156 aa3.83□□□□□ -1.8
MCF2L-230ENST00000491028 PRM1P04553 51 aa3.74□□□□□ -1.81
MCF2L-230ENST00000491028 KRTAP21-2Q3LI59 83 aa3.68□□□□□ -1.82
MCF2L-230ENST00000491028 H3BS24 57 aa3.67□□□□□ -1.82
MCF2L-230ENST00000491028 KRTAP4-12Q9BQ66 201 aa3.64□□□□□ -1.83
MCF2L-230ENST00000491028 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
MCF2L-230ENST00000491028 PHGR1C9JFL3 82 aa3.3□□□□□ -1.88
MCF2L-230ENST00000491028 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
MCF2L-230ENST00000491028 MUC19Q7Z5P9 8384 aa2.87□□□□□ -1.95
MCF2L-230ENST00000491028 KRTAP21-1Q3LI58 79 aa2.53□□□□□ -2
MCF2L-230ENST00000491028 MUC16Q8WXI7 14507 aa2.03□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 132.3 ms